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Michał Szczepanik msz
Repositories Public Activity

msz created pull request nawrotlab/delayed_center-out_uncertainty...#1

Improve CRC1451 tooling compatibility

1 week ago

msz pushed to tabby-tweaks at msz/delayed_center-out_uncertainty...

  • 41ed3b747d Tweak datalad-tabby metadata This introduces tweaks to make the dataset description in .datalad/tabby/self compatible with the CRC1451 convention described in https://rdm.sfb1451.de/data-catalog-submission/#record-components Keeping the technical details consistent with the specification above will allow smooth usage of CRC1451 tooling for metadata catalog generation. Per-file explanation of changes below. ** authors: Affiliation column is repeated with same header (interpreted as a list by the tabby parser). ** dataset: Organism and organism part are entered as NCBITaxon and UBERON ontology identifiers, respectively. Important: for premotor cortex dorsal (PMd), the identifier for "premotor cortex" (http://purl.obolibrary.org/obo/UBERON_0016634) was used instead (I was not able to find a more specific term). Organism part and keywords were split into separate columns, so that parser interprets them as individual items. CC-BY-NC license URL was replaced with its canonical version (no "deed.en" at the end). ** funding: A specific designation is used for the CRC1451 funding. ** publications: DOI representation was made consistent (to always use https://doi.org/ prefix). Only DOIs (not other identifiers) were kept in the doi column. URL for Nawrot (2003) was replaced by an actual URL (to a university page), discovered by resolving the provided URN.
  • 19fc8bdf23 Remove space from file name
  • 1b830a03f6 [DATALAD] new dataset This commit was created by running `datalad create --no-annex --force` which created two files, .datalad/config with a dataset ID and an empty .noannex file. These files will be picked up by DataLad and related tooling. The --no-annex option means that git-annex is not initialized in this repository (it had not been initialized before and AFAIK there are no such plans, but of course anything can be changed in the future). There is no impact on the dataset, or interoperability with other tools (e.g. plain Git) beyond mere presence of these files.
  • 54d7b3941b Update 'README.md'
  • ed4ca89258 Update 'README.md'

1 week ago

msz created new branch tabby-tweaks at msz/delayed_center-out_uncertainty...

1 week ago

msz forked a repository to msz/delayed_center-out_uncertainty...

1 week ago

msz created pull request cmo/neuron_data_1#1

Add dataset metadata in datalad-tabby format

1 month ago

msz pushed to more-metadata at msz/GCAMP7-data

  • 3c4a43049e Align dataset metadata between CFF and tabby This makes the dataset metadata roughly consistent between the two formats by: - joining the tabby and CFF description (abstract) into one text - adding M.T. as an author in CFF Some less important discrepancies (e.g. affiliation) remain and can be addressed separately, if needed.
  • 9b6ea7be5a Add dataset metadata in datalad-tabby format The datalad-tabby format can be used to communicate both general and SFB1451-specific metadata (the latter include e.g. organism and organism-part), so although this duplicates some of the information already present in CFF, it is nonetheless convenient for us to have in the SFB1451 context. This adds tabby files which have been previously shared with me, now used as a dataset self-description. The following changes were made: - removed version from dataset file (no neeed for self-description) - removed files table (no need for self-description) - fixed funding to match expected pattern See: https://rdm.sfb1451.de/data-catalog-submission/
  • 0ba19a1b61 Unannex CITATION.cff
  • 408ae5bd16 [DATALAD] Recorded changes
  • 594d2df44f add data

1 month ago

msz created new branch more-metadata at msz/GCAMP7-data

1 month ago

msz forked a repository to msz/GCAMP7-data

1 month ago

msz created pull request Vogt_Lab/2022_Endle_LPA_feeding_control#1

Add descriptive metadata in datalad-tabby, unannex license

6 months ago

msz pushed to tabby-metadata at msz/2022_Endle_LPA_feeding_control

6 months ago

msz created new branch tabby-metadata at msz/2022_Endle_LPA_feeding_control

6 months ago

msz forked a repository to msz/2022_Endle_LPA_feeding_control

6 months ago

msz opened issue Aswendt_Lab/testdata_aidaqc#1

Formatting error in datacite.yaml

8 months ago

msz commented on issue Aswendt_Lab/2023_Stokowska_Periinfarct#1

Add DataLad ID and try to reunite changes into "master" branch

Ok, I looked a bit more into the branch situation with help from @adswa. I also started fresh (compared to when the PR was started) and force-pushed changes.

8 months ago

msz pushed to master at msz/2023_Stokowska_Periinfarct

  • f06b296e96 Exclude top-level files from annex This configuration explicitly states that the top-level descriptive files (datacite, license, readme) should not be annexed, and should help avoiding accidentally annexing them in future commits. There are many more files in this dataset that were committed to git. Since the dataset seems to be mainly used for data deposition and does not undergo active changes, it seems that there is no need to (retroactively) write rules for files that are stored beyond the top level directory.
  • 225d6b02e5 [DATALAD] new dataset
  • a6456635ff Unannex .gitignore This means that .gitignore will be immediately available (and applicable) in clones, without the need to git-annex get it.
  • View comparison for these 3 commits »

8 months ago

msz pushed to master at msz/2023_Stokowska_Periinfarct

8 months ago