second email list sent

SFBcontacts.r

@@ -1,54 +1,108 @@
-
+library (dplyr)
 
 #SFB contacts
 
 subject1 = "data management in neuroscience: standards and workflow"
 text1 ="
-I have recently started to work as a data curator for the SFB1315 (memory consolidation, with studies spreading from fruit fly models to human). Half of my work is about creating tools to foster ideas and data dissemination inside the SFB, in collaboration with the sourcedata team (The result gallery project :https://github.com/smartfigures-dar/Project_description/blob/master/README.md) and half of my work is to foster data management and open FAIR data.
+I have started to work as a data curator for the SFB1315 in April this year. Our SFB members are studying memory consolidation, using animal models (fruit fly or rodents) or human patients. Half of my work is dedicated to create tools to foster ideas and data dissemination inside the SFB* and the other half is to foster research data management and Open FAIR data. 
 
-I have great hope that the https://nfdi-neuro.de/ project will be a great opportunity to meet people facing similar data management problems, and I will try to be as active as possible in that space.
-On the other hand, if you think there are specific issues for SFBs which you would better not bring to the NFDI, I would be happy to discuss them. 
+For this latter part, I will be actively participating in the NFDI-neuro network as it seems to be the perfect opportunity to share my issues and look for community-driven solutions (https://nfdi-neuro.de/). On the other hand, if you think there are data issues** that would be better tackled outside the NFDI-neuro, I would be happy to discuss them directly with you. 
 
-In practice and as examples, I started to work independently of the NFDI on particular issues : 
+I would be happy to know about your data management practices, get your feedback and/or discuss this further. In particular, I will send a separate email concerning teaching open data skills at the SFB level.
 
-- Open standard in describing animals in animal studies: https://github.com/jcolomb/Description-of-Rodents-in-Scientific-Publications
-- Microscope data: workflow and data format for archiving (see https://librarycarpentry.org/Top-10-FAIR/2019/06/27/imaging/)
-- NWB/BIDS standard: use and implementation (see https://www.nwb.org)
+Dr. Julien Colomb
+Data curator- SFB1315, AG Larkum,
+CCO, room 02 211
+Virschowweg 6, 
+10117 Berlin
 
-I would be happy to get your feedback and discuss it further.
+#openscience #neuroscience #rdm
+https://orcid.org/0000-0002-3127-5520
+Trainer at access2perspectives.com
 
-  Dr. Julien Colomb
 
+*
+ In collaboration with the sourcedata team in Heidelberg, we are developing a result gallery application, to foster figure and data sharing as soon as possilble in the research process. For details and updates, see https://github.com/smartfigures-dar/Project_description/blob/master/README.md
 
-PS:  A second email will follow concerning teaching research data management and other <open science> topics."
+**
+  In practice, and as examples, I started to work (prior of the NFDI invitation) on particular issues : 
+- Open standard in describing animals in animal studies: https://github.com/jcolomb/Description-of-Rodents-in-Scientific-Publications
+- Microscope data: workflow and data format for archiving (see https://librarycarpentry.org/Top-10-FAIR/2019/06/27/imaging/)
+- NWB/BIDS standard: use and implementation (see https://www.nwb.org, https://bids.neuroimaging.io)"
 
-subject2 = "data management in neuroscience: training"
+subject2 = "Data management in neuroscience: Training"
 text2 = '
-I am part of the Access2perspective professional network of free-lancce trainers for researchers (https://access2perspectives.com), I am specialised in teaching principles and tools linked to open scholarship, reproducible research and research data management. I recently started a part-time position as a data curator in a neuroscience consortium (SFB1315), and my workshops were build with a large focus on neurosciences.
+Before I started my part-time work as data curator at the SFB1315, I have been working as a free-lance trainer. I would like to present our offers concerning data management training, as promised in my previous email.
 
-I would like to present a novel concept of training experience we are developing in collaboration with a surf school in Rügen: the "surf and science” retreat (see documentation attached). As it is particularly focus on online collaboration tools and team building, we are convinced that it will be an effective way to foster collaboration between PhD students and postdocs inside the SFB. 
+Indeed, while research data management and open FAIR data is becoming a major topic of funding infrastructures, the opportunities for researchers to get domain-specific and practical training on these novel topics and skills is still very limited. It is particularly problematic for SFBs, where online collaborative work is particularly encouraged and required. 
 
-Alternatively, we also offer more conventional 2-days workshop (see https://access2perspectives.com/2019/04/research-data-management-a-workshop-review/). The content of the workshop can of course be discussed and adjusted to your particular need.
+Within the Access 2 Perspectives professional network of independent trainers, we have developed a 2-days workshop on Open Science with a specific focus on data literacy, open FAIR data and collaborative working (see this blog). The workshop was developed with a neuroscience background and put particular focus on collaborative working, we therefore think it might be of particular interest for neuroscience SFBs.
 
-I hope I could raise your interest and I am looking forward to read from you,
-'
-SFBcontact = data.frame(email="julien.colomb@fu-berlin.de", name= "colomb", sfb="sfb1315-self")
+In addition, we believe that social interaction between the researchers will foster long-term active and fruitful collaboration. We have therefore been developing a novel concept of training experience: the “surf and science” retreat. As presented in the attached document, this one week retreat combines work in a group and trainer input with self-paced practical work and team building activities, in a remote and relaxed atmosphere on Rügen.
+
+
+We hope we could raise your interest and are looking forward to read from you,
+
+Access 2 Perspectives
+Open Science Communication and International Affairs
+https://access2perspectives.com
 
+Julien Colomb, PhD, Trainer and data curator
+Johanna Havemann, PhD, Trainer and consultant'
 
+SFBcontact = data.frame(email="julien.colomb@fu-berlin.de", name= "colomb", sfb="sfb1315-self")
+library(readr)
+SFBcontact <- read_delim("neurosfb_no1315.tsv", 
+                              "\t", escape_double = FALSE, trim_ws = TRUE)
+SFBcontact$contact1
+SFBcontact <- SFBcontact %>% filter (contact1 != "y")
 text_2= ""
 for (i in c(1:nrow(SFBcontact))) {
-  text =paste0("<a href='mailto:", SFBcontact$email[i],
-               "?subject=",
-               subject1
-               ,"&body=Dear Prof. ",SFBcontact$name[i],",%0D%0A",
+  text =paste0("<a href='mailto:",
+               SFBcontact$spokesman_email[i],
+               "?cc=",
+               SFBcontact$teaching_email[i],
+               "&subject=",
+               subject1,
+               "&body=Dear Prof. ",
+               SFBcontact$spokesman_lastname[i],
+               ", Dear ",SFBcontact$teaching_name[i],
+               ",%0D%0A",
                gsub('&NewLine;','%0D%0A',textutils::HTMLencode(text1)),
-               ", '> ",i,SFBcontact$sfb[i]," </a>")
-  text_2 = paste0 (text_2, text, collapse = "<br>")
+               ", '> ",i,SFBcontact$SFBnumber[i]," </a> <br>")
+  text_2 = paste0 (text_2, text, collapse = "%0D%0A")
 }
 
 
 
 
-fileConn<-file("sfb1.html")
-writeLines(c(text_2), fileConn)
+#fileConn<-file("sfb1.html")
+#writeLines(c(text_2), fileConn)
+#close(fileConn)
+
+
+library(readr)
+SFBcontact <- read_delim("neurosfb_no1315.tsv", 
+                         "\t", escape_double = FALSE, trim_ws = TRUE)
+
+text_3= ""
+for (i in c(1:nrow(SFBcontact))) {
+  text =paste0("<a href='mailto:",
+               SFBcontact$spokesman_email[i],
+               "?cc=",
+               SFBcontact$teaching_email[i],
+               ",info@access2perspectives.com&subject=",
+               subject2,
+               "&body=Dear Prof. ",
+               SFBcontact$spokesman_lastname[i],
+               ", Dear ",SFBcontact$teaching_name[i],
+               ",%0D%0A",
+               gsub('&NewLine;','%0D%0A',textutils::HTMLencode(text2)),
+               " '> ",i,SFBcontact$SFBnumber[i]," </a> <br>")
+  text_3 = paste0 (text_3, text, collapse = "%0D%0A")
+}
+
+fileConn<-file("sfb2.html")
+writeLines(c(text_3), fileConn)
 close(fileConn)
+