[DATALAD RUNCMD] Compute HNU_1/sub-0025441/ses-8

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/HNU_1/sub-0025441/ses-8/anat/sub-0025441_ses-8_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "HNU_1/sub-0025441/ses-8"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

HNU_1/sub-0025441/ses-8/label/catROI_sub-0025441_ses-8_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/Jq/MD5E-s61355--79279bc1380c0b5804a1b11e0020991a.mat/MD5E-s61355--79279bc1380c0b5804a1b11e0020991a.mat

HNU_1/sub-0025441/ses-8/label/catROI_sub-0025441_ses-8_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/Px/MD5E-s188860--1d6e7f113f09748cd1cbac069bf5e31f.xml/MD5E-s188860--1d6e7f113f09748cd1cbac069bf5e31f.xml

HNU_1/sub-0025441/ses-8/label/catROIs_sub-0025441_ses-8_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/xm/MD5E-s119990--ef9ace41f56900f00a26d17763779243.mat/MD5E-s119990--ef9ace41f56900f00a26d17763779243.mat

HNU_1/sub-0025441/ses-8/label/catROIs_sub-0025441_ses-8_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/JK/MD5E-s332136--c38f9bbd8847151de354ca8a83d37bdb.xml/MD5E-s332136--c38f9bbd8847151de354ca8a83d37bdb.xml

HNU_1/sub-0025441/ses-8/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

HNU_1/sub-0025441/ses-8/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/Wv/MD5E-s184375--5f0239b43d986834c61676c7887f0967.nii.gz/MD5E-s184375--5f0239b43d986834c61676c7887f0967.nii.gz

HNU_1/sub-0025441/ses-8/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

HNU_1/sub-0025441/ses-8/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/F1/MD5E-s208647--6c31a1d8bf3a03002dcc0ce76e7d8e3e.nii.gz/MD5E-s208647--6c31a1d8bf3a03002dcc0ce76e7d8e3e.nii.gz

HNU_1/sub-0025441/ses-8/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

HNU_1/sub-0025441/ses-8/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/4V/MD5E-s278596--495d9de80a1ef33f5578dc4f7c6c80c3.nii.gz/MD5E-s278596--495d9de80a1ef33f5578dc4f7c6c80c3.nii.gz

HNU_1/sub-0025441/ses-8/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

HNU_1/sub-0025441/ses-8/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/gG/MD5E-s311557--0c0317dca195f81fe73b1c7996941923.nii.gz/MD5E-s311557--0c0317dca195f81fe73b1c7996941923.nii.gz

HNU_1/sub-0025441/ses-8/mri/Tian_Subcortex_S2_7T_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

HNU_1/sub-0025441/ses-8/mri/Tian_Subcortex_S2_7T_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q5/0F/MD5E-s26885--d4f6d77b66f09084b3cc84f3060463a1.nii.gz/MD5E-s26885--d4f6d77b66f09084b3cc84f3060463a1.nii.gz

HNU_1/sub-0025441/ses-8/mri/aal3_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

HNU_1/sub-0025441/ses-8/mri/aal3_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q1/73/MD5E-s208160--64e86b34f5c862445da9bfd295da35da.nii.gz/MD5E-s208160--64e86b34f5c862445da9bfd295da35da.nii.gz

HNU_1/sub-0025441/ses-8/mri/anatomy3_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

HNU_1/sub-0025441/ses-8/mri/anatomy3_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZK/fK/MD5E-s151630--9c42eb3064d4a9ba2fffaeb85067c752.nii.gz/MD5E-s151630--9c42eb3064d4a9ba2fffaeb85067c752.nii.gz

HNU_1/sub-0025441/ses-8/mri/anon_misub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/qm/MD5E-s5593217--b810fcfc30c2f2da7a05a80f749c329f.nii.gz/MD5E-s5593217--b810fcfc30c2f2da7a05a80f749c329f.nii.gz

HNU_1/sub-0025441/ses-8/mri/anon_msub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/x9/MD5E-s11395098--68f8bd814d168112e377416f3bdeaadd.nii.gz/MD5E-s11395098--68f8bd814d168112e377416f3bdeaadd.nii.gz

HNU_1/sub-0025441/ses-8/mri/cat_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZK/Xg/MD5E-s110777--3b963866d180dfd7b62f31a8e6b82577.nii.gz/MD5E-s110777--3b963866d180dfd7b62f31a8e6b82577.nii.gz

HNU_1/sub-0025441/ses-8/mri/cobra_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

HNU_1/sub-0025441/ses-8/mri/cobra_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5W/J1/MD5E-s51924--a0589c8f60a4406dc7f87015b215faf4.nii.gz/MD5E-s51924--a0589c8f60a4406dc7f87015b215faf4.nii.gz

HNU_1/sub-0025441/ses-8/mri/hammers_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

HNU_1/sub-0025441/ses-8/mri/hammers_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/Wk/MD5E-s166091--4eb632edfc7862a31c20694cad138052.nii.gz/MD5E-s166091--4eb632edfc7862a31c20694cad138052.nii.gz

HNU_1/sub-0025441/ses-8/mri/ibsr_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

HNU_1/sub-0025441/ses-8/mri/ibsr_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q5/9w/MD5E-s173481--349f3c7e549f650057a317efc8a980e0.nii.gz/MD5E-s173481--349f3c7e549f650057a317efc8a980e0.nii.gz

HNU_1/sub-0025441/ses-8/mri/it_sub-0025441_ses-8_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/qW/MD5E-s283--72f1537aef860a50cd785abd0aa65152.mat/MD5E-s283--72f1537aef860a50cd785abd0aa65152.mat

HNU_1/sub-0025441/ses-8/mri/it_sub-0025441_ses-8_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kp/ZK/MD5E-s283--ab78bdbf8b91107e5c14677a8422e365.mat/MD5E-s283--ab78bdbf8b91107e5c14677a8422e365.mat

HNU_1/sub-0025441/ses-8/mri/iy_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QF/v2/MD5E-s53035553--b7440ed017669a3e6f40f3acccba221b.nii.gz/MD5E-s53035553--b7440ed017669a3e6f40f3acccba221b.nii.gz

HNU_1/sub-0025441/ses-8/mri/julichbrain_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

HNU_1/sub-0025441/ses-8/mri/julichbrain_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qj/Jz/MD5E-s223537--477b18b855f676d0845cd5bbc98e16f7.nii.gz/MD5E-s223537--477b18b855f676d0845cd5bbc98e16f7.nii.gz

HNU_1/sub-0025441/ses-8/mri/lpba40_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

HNU_1/sub-0025441/ses-8/mri/lpba40_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6G/3W/MD5E-s160854--85d43ac5c229fb29c23144a2605d4473.nii.gz/MD5E-s160854--85d43ac5c229fb29c23144a2605d4473.nii.gz

HNU_1/sub-0025441/ses-8/mri/m0wp1sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/GF/MD5E-s2588815--040b5cab87da1042fbd5a2679d46cfd5.nii.gz/MD5E-s2588815--040b5cab87da1042fbd5a2679d46cfd5.nii.gz

HNU_1/sub-0025441/ses-8/mri/m0wp2sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/FQ/MD5E-s2369973--e90de30d830453b1bba2ce114a32d382.nii.gz/MD5E-s2369973--e90de30d830453b1bba2ce114a32d382.nii.gz

HNU_1/sub-0025441/ses-8/mri/m0wp3sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/vg/MD5E-s2651311--b9fa23b50e02e4479aacedc7f5bf56d4.nii.gz/MD5E-s2651311--b9fa23b50e02e4479aacedc7f5bf56d4.nii.gz

HNU_1/sub-0025441/ses-8/mri/mori_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

HNU_1/sub-0025441/ses-8/mri/mori_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P7/Mp/MD5E-s192303--221007e50e7e25e0d7ae6f0634dfab05.nii.gz/MD5E-s192303--221007e50e7e25e0d7ae6f0634dfab05.nii.gz

HNU_1/sub-0025441/ses-8/mri/mwp1sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m8/mv/MD5E-s2592288--ae1d096fad6ff49f303ac739cfae358f.nii.gz/MD5E-s2592288--ae1d096fad6ff49f303ac739cfae358f.nii.gz

HNU_1/sub-0025441/ses-8/mri/mwp2sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jV/7p/MD5E-s2369354--0c8d4cb5af49d366277f42ac3b38c58c.nii.gz/MD5E-s2369354--0c8d4cb5af49d366277f42ac3b38c58c.nii.gz

HNU_1/sub-0025441/ses-8/mri/mwp3sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/mf/MD5E-s2652164--bdc73a20c30c70bd98c2c519f115565e.nii.gz/MD5E-s2652164--bdc73a20c30c70bd98c2c519f115565e.nii.gz

HNU_1/sub-0025441/ses-8/mri/neuromorphometrics_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

HNU_1/sub-0025441/ses-8/mri/neuromorphometrics_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/ZW/MD5E-s225269--bee67dbe74748c74dea9e2c2541795e2.nii.gz/MD5E-s225269--bee67dbe74748c74dea9e2c2541795e2.nii.gz

HNU_1/sub-0025441/ses-8/mri/p0sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/8G/MD5E-s739568--59a1a15a7fa9be0c6641b133a8c2857f.nii.gz/MD5E-s739568--59a1a15a7fa9be0c6641b133a8c2857f.nii.gz

HNU_1/sub-0025441/ses-8/mri/p1sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qZ/Qq/MD5E-s775624--0c769a77b805388df425724a21ea8e4c.nii.gz/MD5E-s775624--0c769a77b805388df425724a21ea8e4c.nii.gz

HNU_1/sub-0025441/ses-8/mri/p2sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xQ/gV/MD5E-s494299--af6b06afda3b76747db3ae58474c5c94.nii.gz/MD5E-s494299--af6b06afda3b76747db3ae58474c5c94.nii.gz

HNU_1/sub-0025441/ses-8/mri/p3sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025441/ses-8/mri/rp1sub-0025441_ses-8_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gQ/gk/MD5E-s459519--ada72910e7dab27cf474221985cad220.nii.gz/MD5E-s459519--ada72910e7dab27cf474221985cad220.nii.gz

HNU_1/sub-0025441/ses-8/mri/rp2sub-0025441_ses-8_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025441/ses-8/mri/rp3sub-0025441_ses-8_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/4k/MD5E-s330172--7391ed29e24b226238ec53e1eb562157.nii.gz/MD5E-s330172--7391ed29e24b226238ec53e1eb562157.nii.gz

HNU_1/sub-0025441/ses-8/mri/t_sub-0025441_ses-8_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/Vk/MD5E-s283--91cdc7dde7590ca3c359664a57409b0d.mat/MD5E-s283--91cdc7dde7590ca3c359664a57409b0d.mat

HNU_1/sub-0025441/ses-8/mri/t_sub-0025441_ses-8_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/VJ/MD5E-s284--cb7abcd5e08c5ef63751287509fb7ce6.mat/MD5E-s284--cb7abcd5e08c5ef63751287509fb7ce6.mat

HNU_1/sub-0025441/ses-8/mri/thalamus_sub-0025441_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
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HNU_1/sub-0025441/ses-8/mri/thalamus_sub-0025441_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/0K/MD5E-s16944--b5571702edac5013e8a8f9f8bfaddc54.nii.gz/MD5E-s16944--b5571702edac5013e8a8f9f8bfaddc54.nii.gz

HNU_1/sub-0025441/ses-8/mri/wj_sub-0025441_ses-8_run-1_T1w.nii.gz

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