[DATALAD RUNCMD] Compute HNU_1/sub-0025441/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/HNU_1/sub-0025441/ses-2/anat/sub-0025441_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "HNU_1/sub-0025441/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

HNU_1/sub-0025441/ses-2/label/catROI_sub-0025441_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2W/mg/MD5E-s61372--06ba0343a249844ec85b5a915b509c4f.mat/MD5E-s61372--06ba0343a249844ec85b5a915b509c4f.mat

HNU_1/sub-0025441/ses-2/label/catROI_sub-0025441_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zf/7J/MD5E-s188950--1ae6cf47f3d986df10af88285d12cf0a.xml/MD5E-s188950--1ae6cf47f3d986df10af88285d12cf0a.xml

HNU_1/sub-0025441/ses-2/label/catROIs_sub-0025441_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/jQ/MD5E-s120033--0fae99d677f6586929351a9d9837c57a.mat/MD5E-s120033--0fae99d677f6586929351a9d9837c57a.mat

HNU_1/sub-0025441/ses-2/label/catROIs_sub-0025441_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/Jf/MD5E-s332094--2794271e2db4014258fe492727b6c3dc.xml/MD5E-s332094--2794271e2db4014258fe492727b6c3dc.xml

HNU_1/sub-0025441/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

HNU_1/sub-0025441/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xw/zv/MD5E-s183698--5e7d1505ef0acc6ee0b7046ace3f9d6a.nii.gz/MD5E-s183698--5e7d1505ef0acc6ee0b7046ace3f9d6a.nii.gz

HNU_1/sub-0025441/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

HNU_1/sub-0025441/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3F/4F/MD5E-s207754--ee1f1a10d12fa367aedb1c382d48cd26.nii.gz/MD5E-s207754--ee1f1a10d12fa367aedb1c382d48cd26.nii.gz

HNU_1/sub-0025441/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

HNU_1/sub-0025441/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4J/75/MD5E-s277866--05b935e75298f156c5948661af3821dc.nii.gz/MD5E-s277866--05b935e75298f156c5948661af3821dc.nii.gz

HNU_1/sub-0025441/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

HNU_1/sub-0025441/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/Xv/MD5E-s310591--ce578a10b0a2e78745b7f16f15abecb9.nii.gz/MD5E-s310591--ce578a10b0a2e78745b7f16f15abecb9.nii.gz

HNU_1/sub-0025441/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

HNU_1/sub-0025441/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P7/zZ/MD5E-s26885--e349d9923a22a2b79cff76fe637dfc78.nii.gz/MD5E-s26885--e349d9923a22a2b79cff76fe637dfc78.nii.gz

HNU_1/sub-0025441/ses-2/mri/aal3_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

HNU_1/sub-0025441/ses-2/mri/aal3_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/G3/MD5E-s206764--d043f75759d83c244dd2b038d5fed598.nii.gz/MD5E-s206764--d043f75759d83c244dd2b038d5fed598.nii.gz

HNU_1/sub-0025441/ses-2/mri/anatomy3_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

HNU_1/sub-0025441/ses-2/mri/anatomy3_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/W6/MD5E-s150990--a5a5860126df0b66b4dfc0ecbe06833a.nii.gz/MD5E-s150990--a5a5860126df0b66b4dfc0ecbe06833a.nii.gz

HNU_1/sub-0025441/ses-2/mri/anon_misub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/p4/MD5E-s5634626--34a70f67fff1b098c08c8f32ecb27c13.nii.gz/MD5E-s5634626--34a70f67fff1b098c08c8f32ecb27c13.nii.gz

HNU_1/sub-0025441/ses-2/mri/anon_msub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6q/G2/MD5E-s11631202--05ed1d5a3e380c6c7bb0427bbff7ecea.nii.gz/MD5E-s11631202--05ed1d5a3e380c6c7bb0427bbff7ecea.nii.gz

HNU_1/sub-0025441/ses-2/mri/cat_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/Gg/MD5E-s111862--91b70bc4dad4406f34f46237aa5fe8d0.nii.gz/MD5E-s111862--91b70bc4dad4406f34f46237aa5fe8d0.nii.gz

HNU_1/sub-0025441/ses-2/mri/cobra_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

HNU_1/sub-0025441/ses-2/mri/cobra_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/7K/MD5E-s51501--411bdb5336412be4ee30b3fe8647bed4.nii.gz/MD5E-s51501--411bdb5336412be4ee30b3fe8647bed4.nii.gz

HNU_1/sub-0025441/ses-2/mri/hammers_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

HNU_1/sub-0025441/ses-2/mri/hammers_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fg/48/MD5E-s166093--88911e8ebbdb6dcf15ddb62d7110258a.nii.gz/MD5E-s166093--88911e8ebbdb6dcf15ddb62d7110258a.nii.gz

HNU_1/sub-0025441/ses-2/mri/ibsr_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

HNU_1/sub-0025441/ses-2/mri/ibsr_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/PP/MD5E-s172632--561b4a525d52a443bf2ad58e7ccc5c11.nii.gz/MD5E-s172632--561b4a525d52a443bf2ad58e7ccc5c11.nii.gz

HNU_1/sub-0025441/ses-2/mri/it_sub-0025441_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/XF/MD5E-s282--4dd4ca34d08f9a954f69e956a563c276.mat/MD5E-s282--4dd4ca34d08f9a954f69e956a563c276.mat

HNU_1/sub-0025441/ses-2/mri/it_sub-0025441_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qM/QV/MD5E-s283--6995c8a16e6a8ff2d598c47920aff762.mat/MD5E-s283--6995c8a16e6a8ff2d598c47920aff762.mat

HNU_1/sub-0025441/ses-2/mri/iy_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/KQ/MD5E-s52422855--adc8119d0b84b5febde3b36fda7594c6.nii.gz/MD5E-s52422855--adc8119d0b84b5febde3b36fda7594c6.nii.gz

HNU_1/sub-0025441/ses-2/mri/julichbrain_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

HNU_1/sub-0025441/ses-2/mri/julichbrain_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/Xq/MD5E-s223076--26952b2bf70b658410f117ca88797dcc.nii.gz/MD5E-s223076--26952b2bf70b658410f117ca88797dcc.nii.gz

HNU_1/sub-0025441/ses-2/mri/lpba40_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

HNU_1/sub-0025441/ses-2/mri/lpba40_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/WW/MD5E-s160483--584e903bb7de134b800affb24ca801ce.nii.gz/MD5E-s160483--584e903bb7de134b800affb24ca801ce.nii.gz

HNU_1/sub-0025441/ses-2/mri/m0wp1sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Q/zQ/MD5E-s2593193--e220039d81b1d7c64669ccf6d5f57180.nii.gz/MD5E-s2593193--e220039d81b1d7c64669ccf6d5f57180.nii.gz

HNU_1/sub-0025441/ses-2/mri/m0wp2sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fx/gP/MD5E-s2372959--b50abf492cbd660c0c28d1a2441f6960.nii.gz/MD5E-s2372959--b50abf492cbd660c0c28d1a2441f6960.nii.gz

HNU_1/sub-0025441/ses-2/mri/m0wp3sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/Wv/MD5E-s2706236--03c2fa152f007f19c1b5c00c4c3cfb13.nii.gz/MD5E-s2706236--03c2fa152f007f19c1b5c00c4c3cfb13.nii.gz

HNU_1/sub-0025441/ses-2/mri/mori_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

HNU_1/sub-0025441/ses-2/mri/mori_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/Q5/MD5E-s191390--32e7e0437e28b5151820b631f39ea898.nii.gz/MD5E-s191390--32e7e0437e28b5151820b631f39ea898.nii.gz

HNU_1/sub-0025441/ses-2/mri/mwp1sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2M/F9/MD5E-s2597143--d5163db4d7841703af1eb72458eaebaa.nii.gz/MD5E-s2597143--d5163db4d7841703af1eb72458eaebaa.nii.gz

HNU_1/sub-0025441/ses-2/mri/mwp2sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/pp/MD5E-s2372212--36e97149cbd7aa35d1c8cc961888089e.nii.gz/MD5E-s2372212--36e97149cbd7aa35d1c8cc961888089e.nii.gz

HNU_1/sub-0025441/ses-2/mri/mwp3sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/1g/MD5E-s2706724--7026a707de0c24f744e97dca24414f54.nii.gz/MD5E-s2706724--7026a707de0c24f744e97dca24414f54.nii.gz

HNU_1/sub-0025441/ses-2/mri/neuromorphometrics_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

HNU_1/sub-0025441/ses-2/mri/neuromorphometrics_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1W/7m/MD5E-s224785--89c2ef3068dacf222aec02a7feb323b6.nii.gz/MD5E-s224785--89c2ef3068dacf222aec02a7feb323b6.nii.gz

HNU_1/sub-0025441/ses-2/mri/p0sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/X0/MD5E-s745920--2dcd27f35a9b22864fe1fa6b953e1269.nii.gz/MD5E-s745920--2dcd27f35a9b22864fe1fa6b953e1269.nii.gz

HNU_1/sub-0025441/ses-2/mri/p1sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W0/mQ/MD5E-s779341--7511175c96e2fe6bda84266c473f6680.nii.gz/MD5E-s779341--7511175c96e2fe6bda84266c473f6680.nii.gz

HNU_1/sub-0025441/ses-2/mri/p2sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f9/xM/MD5E-s489803--c6826598bb00af097ad1cabfc39904f5.nii.gz/MD5E-s489803--c6826598bb00af097ad1cabfc39904f5.nii.gz

HNU_1/sub-0025441/ses-2/mri/p3sub-0025441_ses-2_run-1_T1w.nii.gz

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HNU_1/sub-0025441/ses-2/mri/rp1sub-0025441_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025441/ses-2/mri/rp2sub-0025441_ses-2_run-1_T1w_affine.nii.gz

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HNU_1/sub-0025441/ses-2/mri/rp3sub-0025441_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025441/ses-2/mri/t_sub-0025441_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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HNU_1/sub-0025441/ses-2/mri/t_sub-0025441_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jf/92/MD5E-s283--e564c103f899bcd7a22a47d0e49ab0ce.mat/MD5E-s283--e564c103f899bcd7a22a47d0e49ab0ce.mat

HNU_1/sub-0025441/ses-2/mri/thalamus_sub-0025441_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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HNU_1/sub-0025441/ses-2/mri/thalamus_sub-0025441_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/8w/MD5E-s16994--53ccaab5bbc39b4cb87e22f79f84aac5.nii.gz/MD5E-s16994--53ccaab5bbc39b4cb87e22f79f84aac5.nii.gz

HNU_1/sub-0025441/ses-2/mri/wj_sub-0025441_ses-2_run-1_T1w.nii.gz

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