[DATALAD RUNCMD] Compute HNU_1/sub-0025446/ses-6

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/HNU_1/sub-0025446/ses-6/anat/sub-0025446_ses-6_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "HNU_1/sub-0025446/ses-6"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

HNU_1/sub-0025446/ses-6/label/catROI_sub-0025446_ses-6_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/fP/MD5E-s61361--d0894c6d0ebaa5b437ddc717fd8118f8.mat/MD5E-s61361--d0894c6d0ebaa5b437ddc717fd8118f8.mat

HNU_1/sub-0025446/ses-6/label/catROI_sub-0025446_ses-6_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/9j/MD5E-s189024--abd0d06f4f8bbd16e83cb24d439eed04.xml/MD5E-s189024--abd0d06f4f8bbd16e83cb24d439eed04.xml

HNU_1/sub-0025446/ses-6/label/catROIs_sub-0025446_ses-6_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6J/M6/MD5E-s120054--524436c409f186316fc44e04c020280a.mat/MD5E-s120054--524436c409f186316fc44e04c020280a.mat

HNU_1/sub-0025446/ses-6/label/catROIs_sub-0025446_ses-6_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/26/MD5E-s332116--db4e15342135cbfab73870cdc8edf53b.xml/MD5E-s332116--db4e15342135cbfab73870cdc8edf53b.xml

HNU_1/sub-0025446/ses-6/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

HNU_1/sub-0025446/ses-6/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1w/vQ/MD5E-s176768--a5f65a1e2f8140e01a21616a81074fe7.nii.gz/MD5E-s176768--a5f65a1e2f8140e01a21616a81074fe7.nii.gz

HNU_1/sub-0025446/ses-6/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

HNU_1/sub-0025446/ses-6/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/wP/MD5E-s199778--6c99038184dedbb6e1cfc7c423bf6b8e.nii.gz/MD5E-s199778--6c99038184dedbb6e1cfc7c423bf6b8e.nii.gz

HNU_1/sub-0025446/ses-6/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

HNU_1/sub-0025446/ses-6/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/02/MD5E-s270123--f79da0c9d753cf52b99536966dc4920b.nii.gz/MD5E-s270123--f79da0c9d753cf52b99536966dc4920b.nii.gz

HNU_1/sub-0025446/ses-6/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

HNU_1/sub-0025446/ses-6/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Z/k1/MD5E-s300924--21e95c902856a7b5e98cb296594e64eb.nii.gz/MD5E-s300924--21e95c902856a7b5e98cb296594e64eb.nii.gz

HNU_1/sub-0025446/ses-6/mri/Tian_Subcortex_S2_7T_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

HNU_1/sub-0025446/ses-6/mri/Tian_Subcortex_S2_7T_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/Zk/MD5E-s25685--d2b32e228cc8bf0bd968b6ef8657597e.nii.gz/MD5E-s25685--d2b32e228cc8bf0bd968b6ef8657597e.nii.gz

HNU_1/sub-0025446/ses-6/mri/aal3_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

HNU_1/sub-0025446/ses-6/mri/aal3_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/6k/MD5E-s200759--a6436d29d0ce5d680933da18349b4535.nii.gz/MD5E-s200759--a6436d29d0ce5d680933da18349b4535.nii.gz

HNU_1/sub-0025446/ses-6/mri/anatomy3_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

HNU_1/sub-0025446/ses-6/mri/anatomy3_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/53/qm/MD5E-s146247--8694ba0a92f8190d7eca107acb9b51c6.nii.gz/MD5E-s146247--8694ba0a92f8190d7eca107acb9b51c6.nii.gz

HNU_1/sub-0025446/ses-6/mri/anon_misub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/Pq/MD5E-s5301414--4f93ecdea9c42d6c676f48fe5d32dee8.nii.gz/MD5E-s5301414--4f93ecdea9c42d6c676f48fe5d32dee8.nii.gz

HNU_1/sub-0025446/ses-6/mri/anon_msub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/ZQ/MD5E-s10669743--6444f3b7314f18b213cf42bef9e76449.nii.gz/MD5E-s10669743--6444f3b7314f18b213cf42bef9e76449.nii.gz

HNU_1/sub-0025446/ses-6/mri/cat_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QF/F1/MD5E-s108035--6f6c069a96ab865a2a4271079e85a9eb.nii.gz/MD5E-s108035--6f6c069a96ab865a2a4271079e85a9eb.nii.gz

HNU_1/sub-0025446/ses-6/mri/cobra_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

HNU_1/sub-0025446/ses-6/mri/cobra_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/W9/MD5E-s50633--a022262546ffeccdc6807ec42ca33d40.nii.gz/MD5E-s50633--a022262546ffeccdc6807ec42ca33d40.nii.gz

HNU_1/sub-0025446/ses-6/mri/hammers_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

HNU_1/sub-0025446/ses-6/mri/hammers_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7M/22/MD5E-s158364--eea2a3d79facf3ecf5862f15ad853742.nii.gz/MD5E-s158364--eea2a3d79facf3ecf5862f15ad853742.nii.gz

HNU_1/sub-0025446/ses-6/mri/ibsr_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

HNU_1/sub-0025446/ses-6/mri/ibsr_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v2/Zp/MD5E-s166087--de1d39ff9275b2667e0d3e97d8465df7.nii.gz/MD5E-s166087--de1d39ff9275b2667e0d3e97d8465df7.nii.gz

HNU_1/sub-0025446/ses-6/mri/it_sub-0025446_ses-6_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/mk/MD5E-s281--9a5197d6bd3f6385545cc912f0895955.mat/MD5E-s281--9a5197d6bd3f6385545cc912f0895955.mat

HNU_1/sub-0025446/ses-6/mri/it_sub-0025446_ses-6_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GX/8v/MD5E-s282--ae576b03e0441a1e88ed32e33e96d165.mat/MD5E-s282--ae576b03e0441a1e88ed32e33e96d165.mat

HNU_1/sub-0025446/ses-6/mri/iy_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WZ/05/MD5E-s49600621--9024af6d47ce0a42f0afc1c162fafe82.nii.gz/MD5E-s49600621--9024af6d47ce0a42f0afc1c162fafe82.nii.gz

HNU_1/sub-0025446/ses-6/mri/julichbrain_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

HNU_1/sub-0025446/ses-6/mri/julichbrain_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pp/1F/MD5E-s214731--6b13264c0cf713c92c6690df9dcd1941.nii.gz/MD5E-s214731--6b13264c0cf713c92c6690df9dcd1941.nii.gz

HNU_1/sub-0025446/ses-6/mri/lpba40_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

HNU_1/sub-0025446/ses-6/mri/lpba40_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/M1/MD5E-s153800--0438b014c4ff3b25440220eab4f65b5e.nii.gz/MD5E-s153800--0438b014c4ff3b25440220eab4f65b5e.nii.gz

HNU_1/sub-0025446/ses-6/mri/m0wp1sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/9X/MD5E-s2604326--ebb3e01fa2cbc6ae3dffa423163bc726.nii.gz/MD5E-s2604326--ebb3e01fa2cbc6ae3dffa423163bc726.nii.gz

HNU_1/sub-0025446/ses-6/mri/m0wp2sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/44/FG/MD5E-s2369030--1b002f43b1007163fcdfdf5fd3e524cb.nii.gz/MD5E-s2369030--1b002f43b1007163fcdfdf5fd3e524cb.nii.gz

HNU_1/sub-0025446/ses-6/mri/m0wp3sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/Wv/MD5E-s2638222--3e9d5ae9846ef1187dcd2bc089413322.nii.gz/MD5E-s2638222--3e9d5ae9846ef1187dcd2bc089413322.nii.gz

HNU_1/sub-0025446/ses-6/mri/mori_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

HNU_1/sub-0025446/ses-6/mri/mori_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zG/62/MD5E-s184511--6e961c264fea3e7f781823c95af17660.nii.gz/MD5E-s184511--6e961c264fea3e7f781823c95af17660.nii.gz

HNU_1/sub-0025446/ses-6/mri/mwp1sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/Kp/MD5E-s2608874--129a33a5c062e440e69373f400e7cc4a.nii.gz/MD5E-s2608874--129a33a5c062e440e69373f400e7cc4a.nii.gz

HNU_1/sub-0025446/ses-6/mri/mwp2sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/x9/MD5E-s2365748--49f748fd3a030865ebab22924eaa6997.nii.gz/MD5E-s2365748--49f748fd3a030865ebab22924eaa6997.nii.gz

HNU_1/sub-0025446/ses-6/mri/mwp3sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/pM/MD5E-s2638579--5e78442de001090fb788e25bd3ee1976.nii.gz/MD5E-s2638579--5e78442de001090fb788e25bd3ee1976.nii.gz

HNU_1/sub-0025446/ses-6/mri/neuromorphometrics_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

HNU_1/sub-0025446/ses-6/mri/neuromorphometrics_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/13/MD5E-s215352--e818af1cd6281b142f0eb0e6dc0b5048.nii.gz/MD5E-s215352--e818af1cd6281b142f0eb0e6dc0b5048.nii.gz

HNU_1/sub-0025446/ses-6/mri/p0sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/w1/MD5E-s701477--1c64d483cf6d17c023d560fde6892c2c.nii.gz/MD5E-s701477--1c64d483cf6d17c023d560fde6892c2c.nii.gz

HNU_1/sub-0025446/ses-6/mri/p1sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/50/MD5E-s739250--572198fa3f8d4409c15eea21a28a8ffb.nii.gz/MD5E-s739250--572198fa3f8d4409c15eea21a28a8ffb.nii.gz

HNU_1/sub-0025446/ses-6/mri/p2sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qQ/4W/MD5E-s461646--b2b157a76fe1d4396606f79d89153bbf.nii.gz/MD5E-s461646--b2b157a76fe1d4396606f79d89153bbf.nii.gz

HNU_1/sub-0025446/ses-6/mri/p3sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/33/MD5E-s454314--5d948653dba5cf8e59d5e1fdcef14a56.nii.gz/MD5E-s454314--5d948653dba5cf8e59d5e1fdcef14a56.nii.gz

HNU_1/sub-0025446/ses-6/mri/rp1sub-0025446_ses-6_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/zG/MD5E-s464510--7f4d894bcfe51a52ec48d04636220716.nii.gz/MD5E-s464510--7f4d894bcfe51a52ec48d04636220716.nii.gz

HNU_1/sub-0025446/ses-6/mri/rp2sub-0025446_ses-6_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025446/ses-6/mri/rp3sub-0025446_ses-6_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qf/zp/MD5E-s333143--1b3b8a53febf8615a2d22dbbee3697db.nii.gz/MD5E-s333143--1b3b8a53febf8615a2d22dbbee3697db.nii.gz

HNU_1/sub-0025446/ses-6/mri/t_sub-0025446_ses-6_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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HNU_1/sub-0025446/ses-6/mri/t_sub-0025446_ses-6_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/92/QF/MD5E-s283--dab3d1c101aabca89295b6b12a655689.mat/MD5E-s283--dab3d1c101aabca89295b6b12a655689.mat

HNU_1/sub-0025446/ses-6/mri/thalamus_sub-0025446_ses-6_run-1_T1w.csv

@@ -0,0 +1 @@
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HNU_1/sub-0025446/ses-6/mri/thalamus_sub-0025446_ses-6_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/x0/MD5E-s16743--23c30ade39e6c25d28e076f2f75694f8.nii.gz/MD5E-s16743--23c30ade39e6c25d28e076f2f75694f8.nii.gz

HNU_1/sub-0025446/ses-6/mri/wj_sub-0025446_ses-6_run-1_T1w.nii.gz

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