[DATALAD RUNCMD] Compute HNU_1/sub-0025446/ses-8

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/HNU_1/sub-0025446/ses-8/anat/sub-0025446_ses-8_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "HNU_1/sub-0025446/ses-8"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

HNU_1/sub-0025446/ses-8/label/catROI_sub-0025446_ses-8_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/J0/MD5E-s61382--e5c60770d5cb570aaef0de486ee316a2.mat/MD5E-s61382--e5c60770d5cb570aaef0de486ee316a2.mat

HNU_1/sub-0025446/ses-8/label/catROI_sub-0025446_ses-8_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5P/z5/MD5E-s189085--2824362353212113126f66beef8870ec.xml/MD5E-s189085--2824362353212113126f66beef8870ec.xml

HNU_1/sub-0025446/ses-8/label/catROIs_sub-0025446_ses-8_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/XV/MD5E-s120069--9a9458390302cdca3f1f8a7543bbb310.mat/MD5E-s120069--9a9458390302cdca3f1f8a7543bbb310.mat

HNU_1/sub-0025446/ses-8/label/catROIs_sub-0025446_ses-8_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/VJ/MD5E-s332175--876a412aa3be908b1fd7d21ebaa5bd7f.xml/MD5E-s332175--876a412aa3be908b1fd7d21ebaa5bd7f.xml

HNU_1/sub-0025446/ses-8/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

HNU_1/sub-0025446/ses-8/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/xf/MD5E-s176974--1333086aeb35d556e4873daceb79ec12.nii.gz/MD5E-s176974--1333086aeb35d556e4873daceb79ec12.nii.gz

HNU_1/sub-0025446/ses-8/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

HNU_1/sub-0025446/ses-8/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kz/zk/MD5E-s199794--8e6263fc9499bbb1b6928390a98c21a9.nii.gz/MD5E-s199794--8e6263fc9499bbb1b6928390a98c21a9.nii.gz

HNU_1/sub-0025446/ses-8/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

HNU_1/sub-0025446/ses-8/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qm/pf/MD5E-s269682--2a0f4cd8b3d4e21f31a8e25ad03f8217.nii.gz/MD5E-s269682--2a0f4cd8b3d4e21f31a8e25ad03f8217.nii.gz

HNU_1/sub-0025446/ses-8/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

HNU_1/sub-0025446/ses-8/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qj/8g/MD5E-s300516--f1208d5153aefd65a10392a5ce4b4cfd.nii.gz/MD5E-s300516--f1208d5153aefd65a10392a5ce4b4cfd.nii.gz

HNU_1/sub-0025446/ses-8/mri/Tian_Subcortex_S2_7T_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

HNU_1/sub-0025446/ses-8/mri/Tian_Subcortex_S2_7T_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZJ/pp/MD5E-s26028--42a8b17e2fcd732598674489535ad6b9.nii.gz/MD5E-s26028--42a8b17e2fcd732598674489535ad6b9.nii.gz

HNU_1/sub-0025446/ses-8/mri/aal3_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

HNU_1/sub-0025446/ses-8/mri/aal3_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/0M/MD5E-s200146--cad076d599315f1f8f212561b7ad4c54.nii.gz/MD5E-s200146--cad076d599315f1f8f212561b7ad4c54.nii.gz

HNU_1/sub-0025446/ses-8/mri/anatomy3_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

HNU_1/sub-0025446/ses-8/mri/anatomy3_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/XZ/MD5E-s146103--b92f82d2b1bb4632bd9f44333adaae29.nii.gz/MD5E-s146103--b92f82d2b1bb4632bd9f44333adaae29.nii.gz

HNU_1/sub-0025446/ses-8/mri/anon_misub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M4/6m/MD5E-s5212802--2c4a247e1012abc63e6ebf04f2c3b026.nii.gz/MD5E-s5212802--2c4a247e1012abc63e6ebf04f2c3b026.nii.gz

HNU_1/sub-0025446/ses-8/mri/anon_msub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/g2/MD5E-s10463122--de59aaf9bf363a57622d30a8abf53d9d.nii.gz/MD5E-s10463122--de59aaf9bf363a57622d30a8abf53d9d.nii.gz

HNU_1/sub-0025446/ses-8/mri/cat_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M8/Jj/MD5E-s107764--3e6a9d3a64aea51bd45427e3fa8e3a34.nii.gz/MD5E-s107764--3e6a9d3a64aea51bd45427e3fa8e3a34.nii.gz

HNU_1/sub-0025446/ses-8/mri/cobra_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

HNU_1/sub-0025446/ses-8/mri/cobra_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m6/9w/MD5E-s50300--a70887712adf66eff6d875ce54f8b1ff.nii.gz/MD5E-s50300--a70887712adf66eff6d875ce54f8b1ff.nii.gz

HNU_1/sub-0025446/ses-8/mri/hammers_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

HNU_1/sub-0025446/ses-8/mri/hammers_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6f/kg/MD5E-s158226--384d2ee4c47769dc69109e9eb55e627c.nii.gz/MD5E-s158226--384d2ee4c47769dc69109e9eb55e627c.nii.gz

HNU_1/sub-0025446/ses-8/mri/ibsr_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

HNU_1/sub-0025446/ses-8/mri/ibsr_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/zP/MD5E-s166000--c863f9bc20893d849fcf69a03722e941.nii.gz/MD5E-s166000--c863f9bc20893d849fcf69a03722e941.nii.gz

HNU_1/sub-0025446/ses-8/mri/it_sub-0025446_ses-8_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/J4/MD5E-s283--07f3f2600e4ed1ddea5dd9ef276b0fc7.mat/MD5E-s283--07f3f2600e4ed1ddea5dd9ef276b0fc7.mat

HNU_1/sub-0025446/ses-8/mri/it_sub-0025446_ses-8_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/ZG/MD5E-s282--6b349f2120c345af7a04f2dfd786ebc3.mat/MD5E-s282--6b349f2120c345af7a04f2dfd786ebc3.mat

HNU_1/sub-0025446/ses-8/mri/iy_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/m7/MD5E-s49546604--d931ce113f88d1b86cb0f1a1e7ee8a16.nii.gz/MD5E-s49546604--d931ce113f88d1b86cb0f1a1e7ee8a16.nii.gz

HNU_1/sub-0025446/ses-8/mri/julichbrain_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

HNU_1/sub-0025446/ses-8/mri/julichbrain_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/4W/MD5E-s215264--dbd06ab25ba4ff8e2b292e04b65b186e.nii.gz/MD5E-s215264--dbd06ab25ba4ff8e2b292e04b65b186e.nii.gz

HNU_1/sub-0025446/ses-8/mri/lpba40_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

HNU_1/sub-0025446/ses-8/mri/lpba40_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/Vx/MD5E-s153790--8d748224bb14251ed0eabd024fe8c228.nii.gz/MD5E-s153790--8d748224bb14251ed0eabd024fe8c228.nii.gz

HNU_1/sub-0025446/ses-8/mri/m0wp1sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/Jv/MD5E-s2602789--64726e8d1e0b6e019b064c88d260cbb2.nii.gz/MD5E-s2602789--64726e8d1e0b6e019b064c88d260cbb2.nii.gz

HNU_1/sub-0025446/ses-8/mri/m0wp2sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xx/94/MD5E-s2372358--2dd2ddc9bb1afb27c0256c0291a74fce.nii.gz/MD5E-s2372358--2dd2ddc9bb1afb27c0256c0291a74fce.nii.gz

HNU_1/sub-0025446/ses-8/mri/m0wp3sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/v3/MD5E-s2639349--6f51f97d5b9eddec665a1a930a17ffa5.nii.gz/MD5E-s2639349--6f51f97d5b9eddec665a1a930a17ffa5.nii.gz

HNU_1/sub-0025446/ses-8/mri/mori_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

HNU_1/sub-0025446/ses-8/mri/mori_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q1/2f/MD5E-s184214--c4c30aad5bd442dbc32731d65e62ca23.nii.gz/MD5E-s184214--c4c30aad5bd442dbc32731d65e62ca23.nii.gz

HNU_1/sub-0025446/ses-8/mri/mwp1sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/2W/MD5E-s2607492--f95190994600a3455572801a76eb246b.nii.gz/MD5E-s2607492--f95190994600a3455572801a76eb246b.nii.gz

HNU_1/sub-0025446/ses-8/mri/mwp2sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wv/ZQ/MD5E-s2368498--1aec306ff84174210cc0c19ddf3064c5.nii.gz/MD5E-s2368498--1aec306ff84174210cc0c19ddf3064c5.nii.gz

HNU_1/sub-0025446/ses-8/mri/mwp3sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qk/m1/MD5E-s2639854--4e747b892b131e9456b9fddfc92849e4.nii.gz/MD5E-s2639854--4e747b892b131e9456b9fddfc92849e4.nii.gz

HNU_1/sub-0025446/ses-8/mri/neuromorphometrics_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

HNU_1/sub-0025446/ses-8/mri/neuromorphometrics_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/00/MD5E-s215080--889290887021f49cdab2bd671109f447.nii.gz/MD5E-s215080--889290887021f49cdab2bd671109f447.nii.gz

HNU_1/sub-0025446/ses-8/mri/p0sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/Xp/MD5E-s697188--2ac52e76eac46cd8da758415cc003773.nii.gz/MD5E-s697188--2ac52e76eac46cd8da758415cc003773.nii.gz

HNU_1/sub-0025446/ses-8/mri/p1sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/vv/MD5E-s734367--f48b8cd0a0ece5c17e4b655109365faf.nii.gz/MD5E-s734367--f48b8cd0a0ece5c17e4b655109365faf.nii.gz

HNU_1/sub-0025446/ses-8/mri/p2sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xV/mP/MD5E-s459353--541da5a5fcd47cdf4f4f61024667a970.nii.gz/MD5E-s459353--541da5a5fcd47cdf4f4f61024667a970.nii.gz

HNU_1/sub-0025446/ses-8/mri/p3sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/gJ/MD5E-s451367--8dfeed03baadf29e735a4ce9f64d6b7b.nii.gz/MD5E-s451367--8dfeed03baadf29e735a4ce9f64d6b7b.nii.gz

HNU_1/sub-0025446/ses-8/mri/rp1sub-0025446_ses-8_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/23/MD5E-s467242--1901e960bea7ddee6d1a68e1d5f3ed9a.nii.gz/MD5E-s467242--1901e960bea7ddee6d1a68e1d5f3ed9a.nii.gz

HNU_1/sub-0025446/ses-8/mri/rp2sub-0025446_ses-8_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/K6/MD5E-s305953--7645390483f5b5a077e9c1881580e61f.nii.gz/MD5E-s305953--7645390483f5b5a077e9c1881580e61f.nii.gz

HNU_1/sub-0025446/ses-8/mri/rp3sub-0025446_ses-8_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/K5/MD5E-s334304--275120c00502186bdc48c01cc66d76e3.nii.gz/MD5E-s334304--275120c00502186bdc48c01cc66d76e3.nii.gz

HNU_1/sub-0025446/ses-8/mri/t_sub-0025446_ses-8_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/14/MD5E-s283--b58ddef7b397934752473930646e4828.mat/MD5E-s283--b58ddef7b397934752473930646e4828.mat

HNU_1/sub-0025446/ses-8/mri/t_sub-0025446_ses-8_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w4/2m/MD5E-s283--32f578f96d72a1638dc3ebb0575a9b50.mat/MD5E-s283--32f578f96d72a1638dc3ebb0575a9b50.mat

HNU_1/sub-0025446/ses-8/mri/thalamus_sub-0025446_ses-8_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

HNU_1/sub-0025446/ses-8/mri/thalamus_sub-0025446_ses-8_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vw/zw/MD5E-s16669--b4944e29f2d9c5e8ba40efb8cc463a87.nii.gz/MD5E-s16669--b4944e29f2d9c5e8ba40efb8cc463a87.nii.gz

HNU_1/sub-0025446/ses-8/mri/wj_sub-0025446_ses-8_run-1_T1w.nii.gz

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