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David Schaeffer 4 years ago
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      readme.md

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m_amygdala.nii.gz


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readme.md

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+Data for "Divergence of rodent and primate medial frontal cortex functional connectivity"
+
+Naming of files:
+$species:
+h=human
+m=marmoset
+r=rat
+
+$cluster:
+c1-c4=clusters 1-4
+c1-10=cluters 1-10 *For human area 24 posterior subclustering
+c1-7=cluters 1-7 *For marmoset LFC clustering
+
+$rois
+Au1 = primary auditory cortex
+PPC = posterior parietal cortex
+S1 = primary somatosensory
+M1 = primary motor
+Amygdala = Amygdala
+Insula = Insula
+striatum = striatum
+1-10 = 1-10 human area 24 posterior
+
+
+Description of contained files:
+$species_$cluster_map: .nii.gz seed resting state maps from each of the 4 clusters, in each species
+
+$species_$roi: .nii.gz files of individual ROIs in respective template spaces
+
+$species_mfc_$cluster: clustering solutions for each species
+
+$species_$cluster_24p: .nii.gz seed resting state maps from each of the 10 area 24p subclusters
+
+$species_$roi_24p_roi: .nii.gz files of individual ROIs for each of the 10 area 24p subclusters
+
+$species_LFC_$cluster_LFC: .nii.gz seed resting state maps from each of the 7 marmoset LFC clusters
+
+*Marmoset LFC clustering solutions provided in previous manuscript, see https://gin.g-node.org/everling_lab_marmosets/Marmoset_LFC_funcitonal_boundaries
+
+*To derive fingerprints and resultant cosine similarity, please use publicly available code as follows:
+1. Extract timecourse from each roi (from RS maps): https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dmaskave.html
+
+2. Normalize; in matlab: e.g., r_mfc_c1 = rescale(dlmread('r_mfc_c1.txt')
+
+3. Calculate cosine similarity: https://www.mathworks.com/matlabcentral/fileexchange/62978-getcosinesimilarity-x-y
+
+4. Plot fingerprint: https://www.mathworks.com/matlabcentral/fileexchange/30305-spider-rader-chart-for-multi-data
+
+*Template anatomical files available for download through respective publications:
+1. Marmoset: C. Liu, et al., A digital 3D atlas of the marmoset brain based on multi-modal MRI. Neuroimage 169, 106–116 (2018).
+2. Rat: G. Paxinos, C. Watson, E. Calabrese, A. Badea, G. A. Johnson, MRI/DTI atlas of the rat brain.
+3. Human: Available through AFNI: https://afni.nimh.nih.gov/AFNIAtlases
+
+*Please contact Dr. Yuki Hori (yhori@uwo.ca) for permutation testing code, made available upon reasonable request.