opfvta-reexecution/publishing/Makefile

# From  https://tex.stackexchange.com/questions/40738/how-to-properly-make-a-latex-project
# -----------------------------------------------------------------------------
# You want latexmk to *always* run, because make does not have all the info.
# Also, include non-file targets in .PHONY so they are run regardless of any
# file of the given name existing.
.PHONY: clean
.PHONY: deep-clean

# If executing in a container:
LATEX_IMAGE=docker.io/centerforopenneuroscience/latex-biber:0.0.1-beta

# Common options for podman invocations
PODMAN_ARGS = --rm  -v "$()../":/data:Z --user="$(id -u):$(id -g)" "$(LATEX_IMAGE)"

SHELL = /bin/bash

# A build of an article.
SHOWCASE_VERSION = singularity_20230908122618
SHOWCASE_PAPERDIFF_PDF = data/paperdiff_$(SHOWCASE_VERSION).pdf

COMMON := $(wildcard common/*)
TEX := $(wildcard *.tex) metadata.tex
STYLE := $(wildcard sty/* rescience.cls)
DATA := $(wildcard data/*.dot)

# The first rule in a Makefile is the one executed by default ("make"). It
# should always be the "all" rule, so that "make" and "make all" are identical.
.PHONY: all
all: article

# Article formats:
FORMAT?=frontiers

#
# CUSTOM BUILD RULES
# -----------------------------------------------------------------------------
metadata.tex: metadata.yaml
	./classes/yaml-to-latex.py -i $< -o $@

#
# FIGURES GENERATION RULES
# -----------------------------------------------------------------------------
# The diff version name is is a placeholder dependency, the targets depend on multiple or variable output files, all of which get generated by `prepare/paperdiff.pdf`
$(SHOWCASE_PAPERDIFF_PDF):
	datalad get ../outputs/*/*.pdf
	prepare/paperdiff.sh $(SHOWCASE_VERSION)

data/paperdiff.csv: $(SHOWCASE_PAPERDIFF_PDF)
	cd prepare; python paperdiff_parse.py

figs/diff_date.pdf: $(SHOWCASE_PAPERDIFF_PDF)
	scripts/diff_date.sh $(SHOWCASE_PAPERDIFF_PDF)

figs/diff_fig.pdf: $(SHOWCASE_PAPERDIFF_PDF)
	scripts/diff_fig.sh $(SHOWCASE_PAPERDIFF_PDF)

figs/diff_text.pdf: $(SHOWCASE_PAPERDIFF_PDF)
	scripts/diff_text.sh $(SHOWCASE_PAPERDIFF_PDF)

figs/diff_pages.pdf: data/paperdiff.csv
	cd scripts; python diff_pages.py

figs/topology.pdf: data/topology.dot
	cd data; dot -Tpdf topology.dot -o ../figs/topology.pdf 2>| topology.log

figs/workflow.pdf: data/workflow.dot
	cd data; dot -Tpdf workflow.dot -o ../figs/workflow.pdf 2>| workflow.log
	# The following is used in the README, as it does not support PDF:
	cd data; dot -Tpng workflow.dot -o ../figs/workflow.png 2>| workflow.log



#
# Article build rules
# -----------------------------------------------------------------------------

.PHONY: container-article-interactive
container-article-interactive: live
	podman run -it $(PODMAN_ARGS)

.PHONY: container-article
container-article:
	podman run --net=none $(PODMAN_ARGS) \
		$(MAKE) clean-publishing
	podman run $(PODMAN_ARGS) \
		$(MAKE) article FORMAT=$(FORMAT)

.PHONY: article
article: $(COMMON) $(TEX) $(STYLE) $(DATA) $(SHOWCASE_PAPERDIFF_PDF)
	latexmk -pdf -pdflatex="xelatex -interaction=nonstopmode" -use-make article-$(FORMAT).tex
	cp article-$(FORMAT).pdf article.pdf

.PHONY: poster
poster: $(COMMON) $(TEX) $(STYLE) $(DATA) $(SHOWCASE_PAPERDIFF_PDF)
	latexmk -pdf -pdflatex="xelatex -interaction=nonstopmode" -use-make poster.tex

.PHONY: container-poster
container-poster: $(COMMON) $(TEX) $(STYLE) $(DATA) $(SHOWCASE_PAPERDIFF_PDF)
	podman run --net=none $(PODMAN_ARGS) \
		$(MAKE) clean-publishing
	podman run $(PODMAN_ARGS) \
		$(MAKE) poster

# Target to specifically remove LaTeX traces.
.PHONY: clean
clean:
	@latexmk -CA
	@rm -rf __pycache__
	@rm -f *.{run.xml,bbl}
	@rm -f data/paperdiff_*.{log,csv,pdf}
	@rm -f data/topology.log
	@rm -f figs/diff_date.pdf
	@rm -f figs/diff_fig.pdf
	@rm -f figs/diff_pages.pdf
	@rm -f figs/diff_text.pdf
	@rm -f figs/topology.pdf
	@rm -f figs/workflow.pdf
	@rm -f metadata.tex
	@rm -f *.nav
	@rm -f *.snm

# Upload target
.PHONY: upload
upload: article poster
	rsync -avP article-$(FORMAT).pdf dreamarticles:articles.chymera.eu/fraaef-$(FORMAT).pdf
	rsync -avP poster.pdf dreamarticles:articles.chymera.eu/fraaef-poster.pdf