Simulation data (implementations in C and on the SpiNNaker neuromorphic architecture) and a Jupyter notebook replicating the results presented in Trensch et al. and Gutzen et al. using the NetworkUnit package.

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Robin Gutzen aaa16ab074 align intros of notebooks		5 years ago
simulation_code	4db211cb2b adding more description to result generating notebook and the simulation codes	5 years ago
simulation_data	1fcba709ac replace corrupted spikefile (itIII/SpiNN/after2h)	5 years ago
spade_analysis	a4ec7d91b6 Initial commit adding data, analysis scripts and results	5 years ago
.gitignore	a4ec7d91b6 Initial commit adding data, analysis scripts and results	5 years ago
LICENSE	4d9d1f917a Updated license	5 years ago
NetworkUnit_examples.ipynb	aaa16ab074 align intros of notebooks	5 years ago
README.md	0cc6810731 Initial commit	5 years ago
datacite.yml	e5f5a9899e Added missing orcid's to datacite.yml	5 years ago
generate_validation_results.ipynb	aaa16ab074 align intros of notebooks	5 years ago
requirements.txt	34d167b0b6 notebook ready for Python3, requires numpy==1.15.3	5 years ago

network_validation

Simulation data (implementations in C and on the SpiNNaker neuromorphic architecture) and a Jupyter notebook replicating the results presented in submitted manuscripts Trensch et al. and Gutzen et al, using the NetworkUnit package.

datacite.yml
Title	Resources for the article 'Reproducible neural network simulations: statistical methods for model validation on the level of network activity data'
Authors	Gutzen,Robin;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany;0000-0001-7373-5962 von Papen,Michael;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany;0000-0001-5030-1643 Trensch,Guido;Simulation Lab Neuroscience, Jülich Supercomputing Centre (JSC), Institute for Advanced Simulation, JARA, Jülich Research Centre, Jülich, Germany;0000-0003-0411-3726 Quaglio,Pietro;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany;0000-0002-8012-3056 Grün,Sonja;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;0000-0003-2829-2220 Denker,Michael;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany;0000-0003-1255-7300
Description	This repository hosts code and data to reproduce the findings of the article 'Reproducible neural network simulations: statistical methods for model validation on the level of network activity data'. In addition, the repository hosts an additional example for the use of the tool "NetworkUnit".
License	BSD-3-Clause (https://opensource.org/licenses/BSD-3-Clause)
References	Gutzen et al. Reproducible neural network simulations: statistical methods for model validation on the level of network activity data. [] (IsSupplementTo) Trensch et al. Rigorous neural network simulations: a model substantiation methodology for increasing the correctness of simulation results in the absence of experimental validation data [] (IsDocumentedBy)
Funding	Helmholtz, ZT-I-0003 EU, EU.720270 EU, EU.785907
Keywords	Neuroscience Electrophysiology Validation Brain Simulation Spikes Data Analysis
Resource Type	Dataset

README.md

network_validation