config-20240418-144142_81347a36-d3b0-4d75-853b-0e8b47cab651.toml 4.5 KB

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  1. [environment]
  2. cache_path = "PosixPath('/home/oesteban/.cache/mriqc')"
  3. cpu_count = 36
  4. exec_env = "posix"
  5. free_mem = 9.3
  6. freesurfer_home = "/opt/freesurfer"
  7. overcommit_policy = "heuristic"
  8. overcommit_limit = "50%"
  9. nipype_version = "1.8.7.dev0"
  10. synthstrip_path = "PosixPath('/opt/freesurfer/models/synthstrip.1.pt')"
  11. templateflow_version = "24.2.0.dev49+gb1f2eb2a.d20240413"
  12. total_memory = 62.51573181152344
  13. version = "24.0.0"
  14. [execution]
  15. ants_float = false
  16. bids_dir = "/data/datasets/HBN"
  17. bids_dir_datalad = true
  18. bids_database_dir = "/data/datasets/HBN/.bids-index"
  19. bids_database_wipe = false
  20. cwd = "/home/oesteban/tmp/mriqc-hbn"
  21. datalad_get = true
  22. debug = false
  23. dry_run = false
  24. dsname = "HBN"
  25. float32 = true
  26. layout = "BIDS Layout: /data/datasets/HBN"
  27. log_dir = "/data/derivatives/HBN/mriqc-24.0.0/logs"
  28. log_level = 15
  29. modalities = [ "dwi",]
  30. no_sub = true
  31. notrack = true
  32. output_dir = "/data/derivatives/HBN/mriqc-24.0.0"
  33. participant_label = [ "NDARBK669XJQ", "NDARBZ913ZB9", "NDARDF373ZDW", "NDAREV294WZ4", "NDARFR301KKP", "NDARGA346NA7", "NDARHB764VZ2", "NDARHC825ZFZ", "NDARHU391FD7", "NDARHX418ZGJ", "NDARHZ852XY0", "NDARJW072UJ3", "NDARKH298MA3", "NDARLJ280UCN", "NDARLX836EHJ", "NDARTJ522CPQ", "NDARTK657DV6", "NDARUC308ZLR", "NDARVY054WEA", "NDARWD585PRZ", "NDARYD546HCB", "NDARYE521RDA", "NDARYW984FLT", "NDARYZ637LK4", "NDARZV895RZ5",]
  34. pdb = false
  35. reports_only = false
  36. resource_monitor = false
  37. run_uuid = "20240418-144142_81347a36-d3b0-4d75-853b-0e8b47cab651"
  38. templateflow_home = "/home/oesteban/.cache/templateflow"
  39. upload_strict = false
  40. verbose_reports = true
  41. webapi_url = "https://mriqc.nimh.nih.gov:443/api/v1"
  42. work_dir = "/home/oesteban/tmp/mriqc-hbn/mriqc-work"
  43. write_graph = false
  44. [workflow]
  45. analysis_level = [ "participant",]
  46. biggest_file_gb = 1
  47. deoblique = false
  48. despike = false
  49. fd_thres = 0.2
  50. fd_radius = 50
  51. fft_spikes_detector = false
  52. min_len_dwi = 17
  53. min_len_bold = 5
  54. species = "human"
  55. template_id = "MNI152NLin2009cAsym"
  56. [nipype]
  57. crashfile_format = "txt"
  58. get_linked_libs = false
  59. local_hash_check = true
  60. nprocs = 24
  61. omp_nthreads = 10
  62. plugin = "MultiProc"
  63. remove_node_directories = false
  64. resource_monitor = false
  65. stop_on_first_crash = true
  66. [settings]
  67. file_path = "/data/derivatives/HBN/mriqc-24.0.0/logs/config-20240418-144142_81347a36-d3b0-4d75-853b-0e8b47cab651.toml"
  68. start_time = 1713444102.6966674
  69. [execution.bids_filters]
  70. [workflow.inputs]
  71. dwi = [ "/data/datasets/HBN/sub-NDARBK669XJQ/ses-HBNsiteSI/dwi/sub-NDARBK669XJQ_ses-HBNsiteSI_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARBZ913ZB9/ses-HBNsiteCBIC/dwi/sub-NDARBZ913ZB9_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARDF373ZDW/ses-HBNsiteRU/dwi/sub-NDARDF373ZDW_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDAREV294WZ4/ses-HBNsiteCBIC/dwi/sub-NDAREV294WZ4_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARFR301KKP/ses-HBNsiteRU/dwi/sub-NDARFR301KKP_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARGA346NA7/ses-HBNsiteRU/dwi/sub-NDARGA346NA7_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARHC825ZFZ/ses-HBNsiteCBIC/dwi/sub-NDARHC825ZFZ_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARHX418ZGJ/ses-HBNsiteRU/dwi/sub-NDARHX418ZGJ_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARHZ852XY0/ses-HBNsiteCBIC/dwi/sub-NDARHZ852XY0_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARJW072UJ3/ses-HBNsiteRU/dwi/sub-NDARJW072UJ3_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARKH298MA3/ses-HBNsiteRU/dwi/sub-NDARKH298MA3_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARLJ280UCN/ses-HBNsiteCBIC/dwi/sub-NDARLJ280UCN_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARTK657DV6/ses-HBNsiteSI/dwi/sub-NDARTK657DV6_ses-HBNsiteSI_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARUC308ZLR/ses-HBNsiteCBIC/dwi/sub-NDARUC308ZLR_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARWD585PRZ/ses-HBNsiteRU/dwi/sub-NDARWD585PRZ_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARYD546HCB/ses-HBNsiteRU/dwi/sub-NDARYD546HCB_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARYE521RDA/ses-HBNsiteRU/dwi/sub-NDARYE521RDA_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARYW984FLT/ses-HBNsiteCBIC/dwi/sub-NDARYW984FLT_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARYZ637LK4/ses-HBNsiteRU/dwi/sub-NDARYZ637LK4_ses-HBNsiteRU_acq-64dir_dwi.nii.gz",]
  72. [nipype.plugin_args]
  73. maxtasksperchild = 1
  74. raise_insufficient = false
  75. n_procs = 24