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- [environment]
- cache_path = "PosixPath('/home/oesteban/.cache/mriqc')"
- cpu_count = 36
- exec_env = "posix"
- free_mem = 9.3
- freesurfer_home = "/opt/freesurfer"
- overcommit_policy = "heuristic"
- overcommit_limit = "50%"
- nipype_version = "1.8.7.dev0"
- synthstrip_path = "PosixPath('/opt/freesurfer/models/synthstrip.1.pt')"
- templateflow_version = "24.2.0.dev49+gb1f2eb2a.d20240413"
- total_memory = 62.51573181152344
- version = "24.0.0"
- [execution]
- ants_float = false
- bids_dir = "/data/datasets/HBN"
- bids_dir_datalad = true
- bids_database_dir = "/data/datasets/HBN/.bids-index"
- bids_database_wipe = false
- cwd = "/home/oesteban/tmp/mriqc-hbn"
- datalad_get = true
- debug = false
- dry_run = false
- dsname = "HBN"
- float32 = true
- layout = "BIDS Layout: /data/datasets/HBN"
- log_dir = "/data/derivatives/HBN/mriqc-24.0.0/logs"
- log_level = 15
- modalities = [ "dwi",]
- no_sub = true
- notrack = true
- output_dir = "/data/derivatives/HBN/mriqc-24.0.0"
- participant_label = [ "NDARBK669XJQ", "NDARBZ913ZB9", "NDARDF373ZDW", "NDAREV294WZ4", "NDARFR301KKP", "NDARGA346NA7", "NDARHB764VZ2", "NDARHC825ZFZ", "NDARHU391FD7", "NDARHX418ZGJ", "NDARHZ852XY0", "NDARJW072UJ3", "NDARKH298MA3", "NDARLJ280UCN", "NDARLX836EHJ", "NDARTJ522CPQ", "NDARTK657DV6", "NDARUC308ZLR", "NDARVY054WEA", "NDARWD585PRZ", "NDARYD546HCB", "NDARYE521RDA", "NDARYW984FLT", "NDARYZ637LK4", "NDARZV895RZ5",]
- pdb = false
- reports_only = false
- resource_monitor = false
- run_uuid = "20240418-144142_81347a36-d3b0-4d75-853b-0e8b47cab651"
- templateflow_home = "/home/oesteban/.cache/templateflow"
- upload_strict = false
- verbose_reports = true
- webapi_url = "https://mriqc.nimh.nih.gov:443/api/v1"
- work_dir = "/home/oesteban/tmp/mriqc-hbn/mriqc-work"
- write_graph = false
- [workflow]
- analysis_level = [ "participant",]
- biggest_file_gb = 1
- deoblique = false
- despike = false
- fd_thres = 0.2
- fd_radius = 50
- fft_spikes_detector = false
- min_len_dwi = 17
- min_len_bold = 5
- species = "human"
- template_id = "MNI152NLin2009cAsym"
- [nipype]
- crashfile_format = "txt"
- get_linked_libs = false
- local_hash_check = true
- nprocs = 24
- omp_nthreads = 10
- plugin = "MultiProc"
- remove_node_directories = false
- resource_monitor = false
- stop_on_first_crash = true
- [settings]
- file_path = "/data/derivatives/HBN/mriqc-24.0.0/logs/config-20240418-144142_81347a36-d3b0-4d75-853b-0e8b47cab651.toml"
- start_time = 1713444102.6966674
- [execution.bids_filters]
- [workflow.inputs]
- dwi = [ "/data/datasets/HBN/sub-NDARBK669XJQ/ses-HBNsiteSI/dwi/sub-NDARBK669XJQ_ses-HBNsiteSI_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARBZ913ZB9/ses-HBNsiteCBIC/dwi/sub-NDARBZ913ZB9_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARDF373ZDW/ses-HBNsiteRU/dwi/sub-NDARDF373ZDW_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDAREV294WZ4/ses-HBNsiteCBIC/dwi/sub-NDAREV294WZ4_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARFR301KKP/ses-HBNsiteRU/dwi/sub-NDARFR301KKP_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARGA346NA7/ses-HBNsiteRU/dwi/sub-NDARGA346NA7_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARHC825ZFZ/ses-HBNsiteCBIC/dwi/sub-NDARHC825ZFZ_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARHX418ZGJ/ses-HBNsiteRU/dwi/sub-NDARHX418ZGJ_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARHZ852XY0/ses-HBNsiteCBIC/dwi/sub-NDARHZ852XY0_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARJW072UJ3/ses-HBNsiteRU/dwi/sub-NDARJW072UJ3_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARKH298MA3/ses-HBNsiteRU/dwi/sub-NDARKH298MA3_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARLJ280UCN/ses-HBNsiteCBIC/dwi/sub-NDARLJ280UCN_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARTK657DV6/ses-HBNsiteSI/dwi/sub-NDARTK657DV6_ses-HBNsiteSI_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARUC308ZLR/ses-HBNsiteCBIC/dwi/sub-NDARUC308ZLR_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARWD585PRZ/ses-HBNsiteRU/dwi/sub-NDARWD585PRZ_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARYD546HCB/ses-HBNsiteRU/dwi/sub-NDARYD546HCB_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARYE521RDA/ses-HBNsiteRU/dwi/sub-NDARYE521RDA_ses-HBNsiteRU_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARYW984FLT/ses-HBNsiteCBIC/dwi/sub-NDARYW984FLT_ses-HBNsiteCBIC_acq-64dir_dwi.nii.gz", "/data/datasets/HBN/sub-NDARYZ637LK4/ses-HBNsiteRU/dwi/sub-NDARYZ637LK4_ses-HBNsiteRU_acq-64dir_dwi.nii.gz",]
- [nipype.plugin_args]
- maxtasksperchild = 1
- raise_insufficient = false
- n_procs = 24
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