test_block.py 29 KB

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  1. # -*- coding: utf-8 -*-
  2. """
  3. Tests of the neo.core.block.Block class
  4. """
  5. # needed for python 3 compatibility
  6. from __future__ import absolute_import, division, print_function
  7. from datetime import datetime
  8. import unittest
  9. import numpy as np
  10. try:
  11. from IPython.lib.pretty import pretty
  12. except ImportError as err:
  13. HAVE_IPYTHON = False
  14. else:
  15. HAVE_IPYTHON = True
  16. from neo.core.block import Block
  17. from neo.core.container import filterdata
  18. from neo.core import SpikeTrain, Unit
  19. from neo.test.tools import (assert_neo_object_is_compliant,
  20. assert_same_sub_schema)
  21. from neo.test.generate_datasets import (get_fake_value, get_fake_values,
  22. fake_neo, clone_object,
  23. get_annotations, TEST_ANNOTATIONS)
  24. class Test__generate_datasets(unittest.TestCase):
  25. def setUp(self):
  26. np.random.seed(0)
  27. self.annotations = dict([(str(x), TEST_ANNOTATIONS[x]) for x in
  28. range(len(TEST_ANNOTATIONS))])
  29. def test__get_fake_values(self):
  30. self.annotations['seed'] = 0
  31. file_datetime = get_fake_value('file_datetime', datetime, seed=0)
  32. rec_datetime = get_fake_value('rec_datetime', datetime, seed=1)
  33. index = get_fake_value('index', int, seed=2)
  34. name = get_fake_value('name', str, seed=3, obj=Block)
  35. description = get_fake_value('description', str, seed=4, obj='Block')
  36. file_origin = get_fake_value('file_origin', str)
  37. attrs1 = {'file_datetime': file_datetime,
  38. 'rec_datetime': rec_datetime,
  39. 'index': index,
  40. 'name': name,
  41. 'description': description,
  42. 'file_origin': file_origin}
  43. attrs2 = attrs1.copy()
  44. attrs2.update(self.annotations)
  45. res11 = get_fake_values(Block, annotate=False, seed=0)
  46. res12 = get_fake_values('Block', annotate=False, seed=0)
  47. res21 = get_fake_values(Block, annotate=True, seed=0)
  48. res22 = get_fake_values('Block', annotate=True, seed=0)
  49. self.assertEqual(res11, attrs1)
  50. self.assertEqual(res12, attrs1)
  51. self.assertEqual(res21, attrs2)
  52. self.assertEqual(res22, attrs2)
  53. def test__fake_neo__cascade(self):
  54. self.annotations['seed'] = None
  55. obj_type = 'Block'
  56. cascade = True
  57. res = fake_neo(obj_type=obj_type, cascade=cascade)
  58. for child in res.children_recur:
  59. del child.annotations['i']
  60. del child.annotations['j']
  61. self.assertTrue(isinstance(res, Block))
  62. assert_neo_object_is_compliant(res)
  63. self.assertEqual(res.annotations, self.annotations)
  64. self.assertEqual(len(res.segments), 1)
  65. seg = res.segments[0]
  66. self.assertEqual(seg.annotations, self.annotations)
  67. self.assertEqual(len(res.channel_indexes), 1)
  68. chx = res.channel_indexes[0]
  69. self.assertEqual(chx.annotations, self.annotations)
  70. self.assertEqual(len(seg.analogsignals), 1)
  71. self.assertEqual(len(seg.analogsignals), 1)
  72. self.assertEqual(len(seg.irregularlysampledsignals), 1)
  73. self.assertEqual(len(seg.spiketrains), 1)
  74. self.assertEqual(len(seg.events), 1)
  75. self.assertEqual(len(seg.epochs), 1)
  76. self.assertEqual(seg.analogsignals[0].annotations,
  77. self.annotations)
  78. self.assertEqual(seg.analogsignals[0].annotations,
  79. self.annotations)
  80. self.assertEqual(seg.irregularlysampledsignals[0].annotations,
  81. self.annotations)
  82. self.assertEqual(seg.spiketrains[0].annotations,
  83. self.annotations)
  84. self.assertEqual(seg.events[0].annotations,
  85. self.annotations)
  86. self.assertEqual(seg.epochs[0].annotations,
  87. self.annotations)
  88. self.assertEqual(len(chx.units), 1)
  89. unit = chx.units[0]
  90. self.assertEqual(unit.annotations, self.annotations)
  91. self.assertEqual(len(chx.analogsignals), 1)
  92. self.assertEqual(chx.analogsignals[0].annotations,
  93. self.annotations)
  94. self.assertEqual(len(unit.spiketrains), 1)
  95. self.assertEqual(unit.spiketrains[0].annotations,
  96. self.annotations)
  97. def test__fake_neo__nocascade(self):
  98. self.annotations['seed'] = None
  99. obj_type = Block
  100. cascade = False
  101. res = fake_neo(obj_type=obj_type, cascade=cascade)
  102. self.assertTrue(isinstance(res, Block))
  103. assert_neo_object_is_compliant(res)
  104. self.assertEqual(res.annotations, self.annotations)
  105. self.assertEqual(len(res.segments), 0)
  106. self.assertEqual(len(res.channel_indexes), 0)
  107. class TestBlock(unittest.TestCase):
  108. def setUp(self):
  109. self.nchildren = 2
  110. self.seed1 = 0
  111. self.seed2 = 10000
  112. self.blk1 = fake_neo(Block, seed=self.seed1, n=self.nchildren)
  113. self.blk2 = fake_neo(Block, seed=self.seed2, n=self.nchildren)
  114. self.targobj = self.blk1
  115. self.segs1 = self.blk1.segments
  116. self.segs2 = self.blk2.segments
  117. self.chxs1 = self.blk1.channel_indexes
  118. self.chxs2 = self.blk2.channel_indexes
  119. self.units1 = [[unit for unit in chx.units] for chx in self.chxs1]
  120. self.units2 = [[unit for unit in chx.units] for chx in self.chxs2]
  121. self.units1 = sum(self.units1, [])
  122. self.units2 = sum(self.units2, [])
  123. self.sigarrs1 = [[sigarr for sigarr in chx.analogsignals]
  124. for chx in self.chxs1]
  125. self.sigarrs2 = [[sigarr for sigarr in chx.analogsignals]
  126. for chx in self.chxs2]
  127. self.trains1 = [[train for train in unit.spiketrains]
  128. for unit in self.units1]
  129. self.trains2 = [[train for train in unit.spiketrains]
  130. for unit in self.units2]
  131. self.irsigs1 = [[irsig for irsig in chx.irregularlysampledsignals]
  132. for chx in self.chxs1]
  133. self.irsigs2 = [[irsig for irsig in chx.irregularlysampledsignals]
  134. for chx in self.chxs2]
  135. self.epcs1 = [[epc for epc in seg.epochs]
  136. for seg in self.segs1]
  137. self.epcs2 = [[epc for epc in seg.epochs]
  138. for seg in self.segs2]
  139. self.evts1 = [[evt for evt in seg.events]
  140. for seg in self.segs1]
  141. self.evts2 = [[evt for evt in seg.events]
  142. for seg in self.segs2]
  143. self.sigarrs1 = sum(self.sigarrs1, [])
  144. self.sigarrs2 = sum(self.sigarrs2, [])
  145. self.trains1 = sum(self.trains1, [])
  146. self.trains2 = sum(self.trains2, [])
  147. self.irsigs1 = sum(self.irsigs1, [])
  148. self.irsigs2 = sum(self.irsigs2, [])
  149. self.epcs1 = sum(self.epcs1, [])
  150. self.epcs2 = sum(self.epcs2, [])
  151. self.evts1 = sum(self.evts1, [])
  152. self.evts2 = sum(self.evts2, [])
  153. def test_block_init(self):
  154. blk = Block(name='a block')
  155. assert_neo_object_is_compliant(blk)
  156. self.assertEqual(blk.name, 'a block')
  157. self.assertEqual(blk.file_origin, None)
  158. def check_creation(self, blk):
  159. assert_neo_object_is_compliant(blk)
  160. seed = blk.annotations['seed']
  161. targ0 = get_fake_value('file_datetime', datetime, seed=seed+0)
  162. self.assertEqual(blk.file_datetime, targ0)
  163. targ1 = get_fake_value('rec_datetime', datetime, seed=seed+1)
  164. self.assertEqual(blk.rec_datetime, targ1)
  165. targ2 = get_fake_value('index', int, seed=seed+2, obj=Block)
  166. self.assertEqual(blk.index, targ2)
  167. targ3 = get_fake_value('name', str, seed=seed+3, obj=Block)
  168. self.assertEqual(blk.name, targ3)
  169. targ4 = get_fake_value('description', str, seed=seed+4, obj=Block)
  170. self.assertEqual(blk.description, targ4)
  171. targ5 = get_fake_value('file_origin', str)
  172. self.assertEqual(blk.file_origin, targ5)
  173. targ6 = get_annotations()
  174. targ6['seed'] = seed
  175. self.assertEqual(blk.annotations, targ6)
  176. self.assertTrue(hasattr(blk, 'channel_indexes'))
  177. self.assertTrue(hasattr(blk, 'segments'))
  178. self.assertEqual(len(blk.channel_indexes), self.nchildren)
  179. self.assertEqual(len(blk.segments), self.nchildren)
  180. def test__creation(self):
  181. self.check_creation(self.blk1)
  182. self.check_creation(self.blk2)
  183. def test__merge(self):
  184. blk1a = fake_neo(Block,
  185. seed=self.seed1, n=self.nchildren)
  186. assert_same_sub_schema(self.blk1, blk1a)
  187. blk1a.annotate(seed=self.seed2)
  188. blk1a.segments.append(self.segs2[0])
  189. blk1a.merge(self.blk2)
  190. segs1a = clone_object(self.blk1).segments
  191. chxs1a = clone_object(self.chxs1)
  192. assert_same_sub_schema(chxs1a + self.chxs2,
  193. blk1a.channel_indexes)
  194. assert_same_sub_schema(segs1a + self.segs2,
  195. blk1a.segments)
  196. def test__children(self):
  197. segs1a = clone_object(self.blk1).segments
  198. chxs1a = clone_object(self.chxs1)
  199. self.assertEqual(self.blk1._container_child_objects,
  200. ('Segment', 'ChannelIndex'))
  201. self.assertEqual(self.blk1._data_child_objects, ())
  202. self.assertEqual(self.blk1._single_parent_objects, ())
  203. self.assertEqual(self.blk1._multi_child_objects, ())
  204. self.assertEqual(self.blk1._multi_parent_objects, ())
  205. self.assertEqual(self.blk1._child_properties,
  206. ('Unit',))
  207. self.assertEqual(self.blk1._single_child_objects,
  208. ('Segment', 'ChannelIndex'))
  209. self.assertEqual(self.blk1._container_child_containers,
  210. ('segments', 'channel_indexes'))
  211. self.assertEqual(self.blk1._data_child_containers, ())
  212. self.assertEqual(self.blk1._single_child_containers,
  213. ('segments', 'channel_indexes'))
  214. self.assertEqual(self.blk1._single_parent_containers, ())
  215. self.assertEqual(self.blk1._multi_child_containers, ())
  216. self.assertEqual(self.blk1._multi_parent_containers, ())
  217. self.assertEqual(self.blk1._child_objects,
  218. ('Segment', 'ChannelIndex'))
  219. self.assertEqual(self.blk1._child_containers,
  220. ('segments', 'channel_indexes'))
  221. self.assertEqual(self.blk1._parent_objects, ())
  222. self.assertEqual(self.blk1._parent_containers, ())
  223. self.assertEqual(len(self.blk1._single_children), 2*self.nchildren)
  224. self.assertEqual(len(self.blk1._multi_children), 0)
  225. self.assertEqual(len(self.blk1.data_children), 0)
  226. self.assertEqual(len(self.blk1.data_children_recur),
  227. 1*self.nchildren**3 + 4*self.nchildren**2)
  228. self.assertEqual(len(self.blk1.container_children), 2*self.nchildren)
  229. self.assertEqual(len(self.blk1.container_children_recur),
  230. 2*self.nchildren + 1*self.nchildren**2)
  231. self.assertEqual(len(self.blk1.children), 2*self.nchildren)
  232. self.assertEqual(len(self.blk1.children_recur),
  233. 2*self.nchildren +
  234. 5*self.nchildren**2 +
  235. 1*self.nchildren**3)
  236. self.assertEqual(self.blk1._multi_children, ())
  237. assert_same_sub_schema(list(self.blk1._single_children),
  238. self.segs1 + self.chxs1)
  239. assert_same_sub_schema(list(self.blk1.container_children),
  240. self.segs1 + self.chxs1)
  241. assert_same_sub_schema(list(self.blk1.container_children_recur),
  242. self.segs1 + self.chxs1 +
  243. self.units1[:2] +
  244. self.units1[2:])
  245. assert_same_sub_schema(list(self.blk1.data_children_recur),
  246. self.sigarrs1[::2] +
  247. self.epcs1[:2] + self.evts1[:2] +
  248. self.irsigs1[::2] +
  249. self.trains1[::2] +
  250. self.sigarrs1[1::2] +
  251. self.epcs1[2:] + self.evts1[2:] +
  252. self.irsigs1[1::2] +
  253. self.trains1[1::2],
  254. exclude=['channel_index'])
  255. assert_same_sub_schema(list(self.blk1.children),
  256. segs1a + chxs1a)
  257. assert_same_sub_schema(list(self.blk1.children_recur),
  258. self.sigarrs1[::2] +
  259. self.epcs1[:2] + self.evts1[:2] +
  260. self.irsigs1[::2] +
  261. self.trains1[::2] +
  262. self.sigarrs1[1::2] +
  263. self.epcs1[2:] + self.evts1[2:] +
  264. self.irsigs1[1::2] +
  265. self.trains1[1::2] +
  266. self.segs1 + self.chxs1 +
  267. self.units1[:2] +
  268. self.units1[2:],
  269. exclude=['channel_index'])
  270. def test__size(self):
  271. targ = {'segments': self.nchildren,
  272. 'channel_indexes': self.nchildren}
  273. self.assertEqual(self.targobj.size, targ)
  274. def test__filter_none(self):
  275. targ = []
  276. res1 = self.targobj.filter()
  277. res2 = self.targobj.filter({})
  278. res3 = self.targobj.filter([])
  279. res4 = self.targobj.filter([{}])
  280. res5 = self.targobj.filter([{}, {}])
  281. res6 = self.targobj.filter([{}, {}])
  282. res7 = self.targobj.filter(targdict={})
  283. res8 = self.targobj.filter(targdict=[])
  284. res9 = self.targobj.filter(targdict=[{}])
  285. res10 = self.targobj.filter(targdict=[{}, {}])
  286. assert_same_sub_schema(res1, targ)
  287. assert_same_sub_schema(res2, targ)
  288. assert_same_sub_schema(res3, targ)
  289. assert_same_sub_schema(res4, targ)
  290. assert_same_sub_schema(res5, targ)
  291. assert_same_sub_schema(res6, targ)
  292. assert_same_sub_schema(res7, targ)
  293. assert_same_sub_schema(res8, targ)
  294. assert_same_sub_schema(res9, targ)
  295. assert_same_sub_schema(res10, targ)
  296. def test__filter_annotation_single(self):
  297. targ = ([self.epcs1[1], self.evts1[1]] +
  298. self.sigarrs1[1::2] +
  299. [self.epcs1[3], self.evts1[3]] +
  300. self.irsigs1[1::2] +
  301. self.trains1[1::2])
  302. res0 = self.targobj.filter(j=1)
  303. res1 = self.targobj.filter({'j': 1})
  304. res2 = self.targobj.filter(targdict={'j': 1})
  305. res3 = self.targobj.filter([{'j': 1}])
  306. res4 = self.targobj.filter(targdict=[{'j': 1}])
  307. assert_same_sub_schema(res0, targ)
  308. assert_same_sub_schema(res1, targ)
  309. assert_same_sub_schema(res2, targ)
  310. assert_same_sub_schema(res3, targ)
  311. assert_same_sub_schema(res4, targ)
  312. def test__filter_single_annotation_nores(self):
  313. targ = []
  314. res0 = self.targobj.filter(j=5)
  315. res1 = self.targobj.filter({'j': 5})
  316. res2 = self.targobj.filter(targdict={'j': 5})
  317. res3 = self.targobj.filter([{'j': 5}])
  318. res4 = self.targobj.filter(targdict=[{'j': 5}])
  319. assert_same_sub_schema(res0, targ)
  320. assert_same_sub_schema(res1, targ)
  321. assert_same_sub_schema(res2, targ)
  322. assert_same_sub_schema(res3, targ)
  323. assert_same_sub_schema(res4, targ)
  324. def test__filter_attribute_single(self):
  325. targ = [self.trains1[0]]
  326. name = self.trains1[0].name
  327. res0 = self.targobj.filter(name=name)
  328. res1 = self.targobj.filter({'name': name})
  329. res2 = self.targobj.filter(targdict={'name': name})
  330. assert_same_sub_schema(res0, targ)
  331. assert_same_sub_schema(res1, targ)
  332. assert_same_sub_schema(res2, targ)
  333. def test__filter_attribute_single_nores(self):
  334. targ = []
  335. name = self.trains2[0].name
  336. res0 = self.targobj.filter(name=name)
  337. res1 = self.targobj.filter({'name': name})
  338. res2 = self.targobj.filter(targdict={'name': name})
  339. assert_same_sub_schema(res0, targ)
  340. assert_same_sub_schema(res1, targ)
  341. assert_same_sub_schema(res2, targ)
  342. def test__filter_multi(self):
  343. targ = ([self.epcs1[1], self.evts1[1]] +
  344. self.sigarrs1[1::2] +
  345. [self.epcs1[3], self.evts1[3]] +
  346. self.irsigs1[1::2] +
  347. self.trains1[1::2] +
  348. [self.trains1[0]])
  349. name = self.trains1[0].name
  350. res0 = self.targobj.filter(name=name, j=1)
  351. res1 = self.targobj.filter({'name': name, 'j': 1})
  352. res2 = self.targobj.filter(targdict={'name': name, 'j': 1})
  353. assert_same_sub_schema(res0, targ)
  354. assert_same_sub_schema(res1, targ)
  355. assert_same_sub_schema(res2, targ)
  356. def test__filter_multi_nores(self):
  357. targ = []
  358. name0 = self.sigarrs2[0].name
  359. res0 = self.targobj.filter([{'j': 5}, {}])
  360. res1 = self.targobj.filter({}, j=0)
  361. res2 = self.targobj.filter([{}], i=0)
  362. res3 = self.targobj.filter({'name': name0}, j=1)
  363. res4 = self.targobj.filter(targdict={'name': name0}, j=1)
  364. res5 = self.targobj.filter(name=name0, targdict={'j': 1})
  365. res6 = self.targobj.filter(name=name0, j=5)
  366. res7 = self.targobj.filter({'name': name0, 'j': 5})
  367. res8 = self.targobj.filter(targdict={'name': name0, 'j': 5})
  368. res9 = self.targobj.filter({'name': name0}, j=5)
  369. res10 = self.targobj.filter(targdict={'name': name0}, j=5)
  370. res11 = self.targobj.filter(name=name0, targdict={'j': 5})
  371. res12 = self.targobj.filter({'name': name0}, j=5)
  372. res13 = self.targobj.filter(targdict={'name': name0}, j=5)
  373. res14 = self.targobj.filter(name=name0, targdict={'j': 5})
  374. assert_same_sub_schema(res0, targ)
  375. assert_same_sub_schema(res1, targ)
  376. assert_same_sub_schema(res2, targ)
  377. assert_same_sub_schema(res3, targ)
  378. assert_same_sub_schema(res4, targ)
  379. assert_same_sub_schema(res5, targ)
  380. assert_same_sub_schema(res6, targ)
  381. assert_same_sub_schema(res7, targ)
  382. assert_same_sub_schema(res8, targ)
  383. assert_same_sub_schema(res9, targ)
  384. assert_same_sub_schema(res10, targ)
  385. assert_same_sub_schema(res11, targ)
  386. assert_same_sub_schema(res12, targ)
  387. assert_same_sub_schema(res13, targ)
  388. assert_same_sub_schema(res14, targ)
  389. def test__filter_multi_partres_annotation_attribute(self):
  390. targ = [self.trains1[0]]
  391. name = self.trains1[0].name
  392. res0 = self.targobj.filter(name=name, j=90)
  393. res1 = self.targobj.filter({'name': name, 'j': 90})
  394. res2 = self.targobj.filter(targdict={'name': name, 'j': 90})
  395. assert_same_sub_schema(res0, targ)
  396. assert_same_sub_schema(res1, targ)
  397. assert_same_sub_schema(res2, targ)
  398. def test__filter_multi_partres_annotation_annotation(self):
  399. targ = self.trains1[::2]
  400. res0 = self.targobj.filter([{'j': 0}, {'i': 0}])
  401. res1 = self.targobj.filter({'j': 0}, i=0)
  402. res2 = self.targobj.filter([{'j': 0}], i=0)
  403. assert_same_sub_schema(res0, targ)
  404. assert_same_sub_schema(res1, targ)
  405. assert_same_sub_schema(res2, targ)
  406. def test__filter_single_annotation_obj_single(self):
  407. targ = self.trains1[1::2]
  408. res0 = self.targobj.filter(j=1, objects='SpikeTrain')
  409. res1 = self.targobj.filter(j=1, objects=SpikeTrain)
  410. res2 = self.targobj.filter(j=1, objects=['SpikeTrain'])
  411. res3 = self.targobj.filter(j=1, objects=[SpikeTrain])
  412. assert_same_sub_schema(res0, targ)
  413. assert_same_sub_schema(res1, targ)
  414. assert_same_sub_schema(res2, targ)
  415. assert_same_sub_schema(res3, targ)
  416. def test__filter_single_annotation_norecur(self):
  417. targ = []
  418. res0 = self.targobj.filter(j=1, recursive=False)
  419. assert_same_sub_schema(res0, targ)
  420. def test__filter_single_attribute_norecur(self):
  421. targ = []
  422. res0 = self.targobj.filter(name=self.sigarrs1[0].name,
  423. recursive=False)
  424. assert_same_sub_schema(res0, targ)
  425. def test__filter_single_annotation_nodata(self):
  426. targ = []
  427. res0 = self.targobj.filter(j=1, data=False)
  428. assert_same_sub_schema(res0, targ)
  429. def test__filter_single_attribute_nodata(self):
  430. targ = []
  431. res0 = self.targobj.filter(name=self.sigarrs1[0].name, data=False)
  432. assert_same_sub_schema(res0, targ)
  433. def test__filter_single_annotation_nodata_norecur(self):
  434. targ = []
  435. res0 = self.targobj.filter(j=1,
  436. data=False, recursive=False)
  437. assert_same_sub_schema(res0, targ)
  438. def test__filter_single_attribute_nodata_norecur(self):
  439. targ = []
  440. res0 = self.targobj.filter(name=self.sigarrs1[0].name,
  441. data=False, recursive=False)
  442. assert_same_sub_schema(res0, targ)
  443. def test__filter_single_annotation_container(self):
  444. targ = ([self.epcs1[1], self.evts1[1]] +
  445. self.sigarrs1[1::2] +
  446. [self.epcs1[3], self.evts1[3]] +
  447. self.irsigs1[1::2] +
  448. self.trains1[1::2] +
  449. [self.segs1[1], self.chxs1[1],
  450. self.units1[1],
  451. self.units1[3]])
  452. res0 = self.targobj.filter(j=1, container=True)
  453. assert_same_sub_schema(res0, targ)
  454. def test__filter_single_attribute_container_data(self):
  455. targ = [self.trains1[0]]
  456. res0 = self.targobj.filter(name=self.trains1[0].name, container=True)
  457. assert_same_sub_schema(res0, targ)
  458. def test__filter_single_annotation_container_norecur(self):
  459. targ = [self.segs1[1], self.chxs1[1]]
  460. res0 = self.targobj.filter(j=1, container=True, recursive=False)
  461. assert_same_sub_schema(res0, targ)
  462. def test__filter_single_attribute_container_norecur(self):
  463. targ = [self.segs1[0]]
  464. res0 = self.targobj.filter(name=self.segs1[0].name,
  465. container=True, recursive=False)
  466. assert_same_sub_schema(res0, targ)
  467. def test__filter_single_attribute_container_norecur_nores(self):
  468. targ = []
  469. res0 = self.targobj.filter(name=self.trains1[0].name,
  470. container=True, recursive=False)
  471. assert_same_sub_schema(res0, targ)
  472. def test__filter_single_annotation_nodata_container(self):
  473. targ = [self.segs1[1], self.chxs1[1],
  474. self.units1[1],
  475. self.units1[3]]
  476. res0 = self.targobj.filter(j=1,
  477. data=False, container=True)
  478. assert_same_sub_schema(res0, targ)
  479. def test__filter_single_attribute_nodata_container_nores(self):
  480. targ = []
  481. res0 = self.targobj.filter(name=self.trains1[0].name,
  482. data=False, container=True)
  483. assert_same_sub_schema(res0, targ)
  484. def test__filter_single_annotation_nodata_container_norecur(self):
  485. targ = [self.segs1[1], self.chxs1[1]]
  486. res0 = self.targobj.filter(j=1,
  487. data=False, container=True,
  488. recursive=False)
  489. assert_same_sub_schema(res0, targ)
  490. def test__filter_single_attribute_nodata_container_norecur(self):
  491. targ = [self.segs1[0]]
  492. res0 = self.targobj.filter(name=self.segs1[0].name,
  493. data=False, container=True,
  494. recursive=False)
  495. assert_same_sub_schema(res0, targ)
  496. def test__filter_single_attribute_nodata_container_norecur_nores(self):
  497. targ = []
  498. res0 = self.targobj.filter(name=self.trains1[0].name,
  499. data=False, container=True,
  500. recursive=False)
  501. assert_same_sub_schema(res0, targ)
  502. def test__filterdata_multi(self):
  503. data = self.targobj.children_recur
  504. targ = ([self.epcs1[1], self.evts1[1]] +
  505. self.sigarrs1[1::2] +
  506. [self.epcs1[3], self.evts1[3]] +
  507. self.irsigs1[1::2] +
  508. self.trains1[1::2] +
  509. [self.segs1[1], self.chxs1[1],
  510. self.units1[1],
  511. self.units1[3],
  512. self.trains1[0]])
  513. name = self.trains1[0].name
  514. res0 = filterdata(data, name=name, j=1)
  515. res1 = filterdata(data, {'name': name, 'j': 1})
  516. res2 = filterdata(data, targdict={'name': name, 'j': 1})
  517. assert_same_sub_schema(res0, targ)
  518. assert_same_sub_schema(res1, targ)
  519. assert_same_sub_schema(res2, targ)
  520. def test__filterdata_multi_nores(self):
  521. data = self.targobj.children_recur
  522. targ = []
  523. name1 = self.sigarrs1[0].name
  524. name2 = self.sigarrs2[0].name
  525. res0 = filterdata(data, [{'j': 0}, {}])
  526. res1 = filterdata(data, {}, i=0)
  527. res2 = filterdata(data, [{}], i=0)
  528. res3 = filterdata(data, name=name1, targdict={'j': 1})
  529. res4 = filterdata(data, {'name': name1}, j=1)
  530. res5 = filterdata(data, targdict={'name': name1}, j=1)
  531. res6 = filterdata(data, name=name2, j=5)
  532. res7 = filterdata(data, {'name': name2, 'j': 5})
  533. res8 = filterdata(data, targdict={'name': name2, 'j': 5})
  534. res9 = filterdata(data, {'name': name2}, j=5)
  535. res10 = filterdata(data, targdict={'name': name2}, j=5)
  536. res11 = filterdata(data, name=name2, targdict={'j': 5})
  537. res12 = filterdata(data, {'name': name1}, j=5)
  538. res13 = filterdata(data, targdict={'name': name1}, j=5)
  539. res14 = filterdata(data, name=name1, targdict={'j': 5})
  540. assert_same_sub_schema(res0, targ)
  541. assert_same_sub_schema(res1, targ)
  542. assert_same_sub_schema(res2, targ)
  543. assert_same_sub_schema(res3, targ)
  544. assert_same_sub_schema(res4, targ)
  545. assert_same_sub_schema(res5, targ)
  546. assert_same_sub_schema(res6, targ)
  547. assert_same_sub_schema(res7, targ)
  548. assert_same_sub_schema(res8, targ)
  549. assert_same_sub_schema(res9, targ)
  550. assert_same_sub_schema(res10, targ)
  551. assert_same_sub_schema(res11, targ)
  552. assert_same_sub_schema(res12, targ)
  553. assert_same_sub_schema(res13, targ)
  554. assert_same_sub_schema(res14, targ)
  555. def test__filterdata_multi_partres_annotation_attribute(self):
  556. data = self.targobj.children_recur
  557. targ = [self.trains1[0]]
  558. name = self.trains1[0].name
  559. res0 = filterdata(data, name=name, j=90)
  560. res1 = filterdata(data, {'name': name, 'j': 90})
  561. res2 = filterdata(data, targdict={'name': name, 'j': 90})
  562. assert_same_sub_schema(res0, targ)
  563. assert_same_sub_schema(res1, targ)
  564. assert_same_sub_schema(res2, targ)
  565. def test__filterdata_multi_partres_annotation_annotation(self):
  566. data = self.targobj.children_recur
  567. targ = (self.trains1[::2] +
  568. self.segs1[:1] + self.units1[::2])
  569. res0 = filterdata(data, [{'j': 0}, {'i': 0}])
  570. res1 = filterdata(data, {'j': 0}, i=0)
  571. res2 = filterdata(data, [{'j': 0}], i=0)
  572. assert_same_sub_schema(res0, targ)
  573. assert_same_sub_schema(res1, targ)
  574. assert_same_sub_schema(res2, targ)
  575. # @unittest.skipUnless(HAVE_IPYTHON, "requires IPython")
  576. # def test__pretty(self):
  577. # res = pretty(self.blk1)
  578. # ann = get_annotations()
  579. # ann['seed'] = self.seed1
  580. # ann = pretty(ann).replace('\n ', '\n ')
  581. #
  582. # seg0 = pretty(self.segs1[0])
  583. # seg1 = pretty(self.segs1[1])
  584. # seg0 = seg0.replace('\n', '\n ')
  585. # seg1 = seg1.replace('\n', '\n ')
  586. #
  587. # targ = ("Block with " +
  588. # ("%s segments, %s channel_indexes\n" %
  589. # (len(self.segs1), len(self.chxs1))) +
  590. # ("name: '%s'\ndescription: '%s'\n" % (self.blk1.name,
  591. # self.blk1.description)) +
  592. # ("annotations: %s\n" % ann) +
  593. # ("file_origin: '%s'\n" % self.blk1.file_origin) +
  594. # ("file_datetime: %s\n" % repr(self.blk1.file_datetime)) +
  595. # ("rec_datetime: %s\n" % repr(self.blk1.rec_datetime)) +
  596. # ("index: %s\n" % self.blk1.index) +
  597. #
  598. #
  599. # ("# segments (N=%s)\n" % len(self.segs1)) +
  600. # ('%s: %s\n' % (0, seg0)) +
  601. # ('%s: %s' % (1, seg1)))
  602. #
  603. # self.assertEqual(res, targ)
  604. def test_block_list_units(self):
  605. assert_same_sub_schema(self.units1, self.blk1.list_units)
  606. assert_same_sub_schema(self.units2, self.blk2.list_units)
  607. assert_same_sub_schema(self.units1,
  608. self.blk1.list_children_by_class(Unit))
  609. assert_same_sub_schema(self.units2,
  610. self.blk2.list_children_by_class(Unit))
  611. assert_same_sub_schema(self.units1,
  612. self.blk1.list_children_by_class('Unit'))
  613. assert_same_sub_schema(self.units2,
  614. self.blk2.list_children_by_class('Unit'))
  615. if __name__ == "__main__":
  616. unittest.main()