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@@ -7,7 +7,8 @@ class SimgCmd:
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self.command = None
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else:
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self.command = (f"singularity run -B {config['work_dir']}:{config['work_dir']},"
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- f"{config['output_dir']}:{config['output_dir']}")
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+ f"{config['output_dir']}:{config['output_dir']},"
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+ f"{config['subject_dir']:{config['subject_dir']}}")
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self._simg = simg
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def cmd(self, command: str, options: Union[str, None] = None) -> str:
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