[DATALAD RUNCMD] Compute BNU_1/sub-0025870/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025870/ses-2/anat/sub-0025870_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025870/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025870/ses-2/label/catROI_sub-0025870_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/5m/MD5E-s61339--95d11d745217a2411e0465f7a69a975f.mat/MD5E-s61339--95d11d745217a2411e0465f7a69a975f.mat

BNU_1/sub-0025870/ses-2/label/catROI_sub-0025870_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/pv/MD5E-s188675--2819a48b0d12441d097c119a4f621297.xml/MD5E-s188675--2819a48b0d12441d097c119a4f621297.xml

BNU_1/sub-0025870/ses-2/label/catROIs_sub-0025870_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XP/jm/MD5E-s120036--f9cbc04f1eee2b8a4f25fd8cfce23161.mat/MD5E-s120036--f9cbc04f1eee2b8a4f25fd8cfce23161.mat

BNU_1/sub-0025870/ses-2/label/catROIs_sub-0025870_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/5x/MD5E-s332070--f13dada1bef4eecb94db139c238209f5.xml/MD5E-s332070--f13dada1bef4eecb94db139c238209f5.xml

BNU_1/sub-0025870/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025870/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/26/MD5E-s155393--228a890ea6cb482378219d8fb834571b.nii.gz/MD5E-s155393--228a890ea6cb482378219d8fb834571b.nii.gz

BNU_1/sub-0025870/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025870/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/w1/MD5E-s175958--feb46f0c1db71843ba4bf61a15a3d955.nii.gz/MD5E-s175958--feb46f0c1db71843ba4bf61a15a3d955.nii.gz

BNU_1/sub-0025870/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025870/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mw/v2/MD5E-s235239--2a080afd1c3a5fe8f5f47bd13eef7db7.nii.gz/MD5E-s235239--2a080afd1c3a5fe8f5f47bd13eef7db7.nii.gz

BNU_1/sub-0025870/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025870/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mp/94/MD5E-s263098--41c83eacf506f80381e833a888741f5b.nii.gz/MD5E-s263098--41c83eacf506f80381e833a888741f5b.nii.gz

BNU_1/sub-0025870/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025870/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vm/Mw/MD5E-s20883--0b733bdcbe18066f720f8ad61271f40a.nii.gz/MD5E-s20883--0b733bdcbe18066f720f8ad61271f40a.nii.gz

BNU_1/sub-0025870/ses-2/mri/aal3_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025870/ses-2/mri/aal3_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5m/0V/MD5E-s178863--035e6360039cfcf51b963b21bc9f052b.nii.gz/MD5E-s178863--035e6360039cfcf51b963b21bc9f052b.nii.gz

BNU_1/sub-0025870/ses-2/mri/anatomy3_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025870/ses-2/mri/anatomy3_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/Fj/MD5E-s126006--f3d6d5cb1fab6415c8fad45bf72e81dc.nii.gz/MD5E-s126006--f3d6d5cb1fab6415c8fad45bf72e81dc.nii.gz

BNU_1/sub-0025870/ses-2/mri/anon_misub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/fv/MD5E-s4482721--de2c2d73b068751c0da1597287058a34.nii.gz/MD5E-s4482721--de2c2d73b068751c0da1597287058a34.nii.gz

BNU_1/sub-0025870/ses-2/mri/anon_msub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3F/QV/MD5E-s9114131--55f86ba2edd952985b8570165c0d8c61.nii.gz/MD5E-s9114131--55f86ba2edd952985b8570165c0d8c61.nii.gz

BNU_1/sub-0025870/ses-2/mri/cat_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/53/mQ/MD5E-s93559--474ccd2e5fa0164f7d1c32c8fd8a49ac.nii.gz/MD5E-s93559--474ccd2e5fa0164f7d1c32c8fd8a49ac.nii.gz

BNU_1/sub-0025870/ses-2/mri/cobra_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025870/ses-2/mri/cobra_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/FP/MD5E-s44341--32cd68c8dd18c67a6d4f4299c1f259f5.nii.gz/MD5E-s44341--32cd68c8dd18c67a6d4f4299c1f259f5.nii.gz

BNU_1/sub-0025870/ses-2/mri/hammers_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025870/ses-2/mri/hammers_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/vw/MD5E-s139879--097db250b5e03538b5a3c7b7e569af7d.nii.gz/MD5E-s139879--097db250b5e03538b5a3c7b7e569af7d.nii.gz

BNU_1/sub-0025870/ses-2/mri/ibsr_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025870/ses-2/mri/ibsr_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/2z/MD5E-s148536--971993cabf9264829f15a95e02be3101.nii.gz/MD5E-s148536--971993cabf9264829f15a95e02be3101.nii.gz

BNU_1/sub-0025870/ses-2/mri/it_sub-0025870_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/kK/MD5E-s282--186ac7a4e2aaf07cdc6893b668222b9a.mat/MD5E-s282--186ac7a4e2aaf07cdc6893b668222b9a.mat

BNU_1/sub-0025870/ses-2/mri/it_sub-0025870_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/4g/MD5E-s283--581b2973e5aae9c880ff2107ceb14e4c.mat/MD5E-s283--581b2973e5aae9c880ff2107ceb14e4c.mat

BNU_1/sub-0025870/ses-2/mri/iy_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/2Q/MD5E-s39257873--fef5d6198ef09ab4dadb9aa0c89ef690.nii.gz/MD5E-s39257873--fef5d6198ef09ab4dadb9aa0c89ef690.nii.gz

BNU_1/sub-0025870/ses-2/mri/julichbrain_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025870/ses-2/mri/julichbrain_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/Pk/MD5E-s186912--171ca2e8eb793f188f9dbb1354186b74.nii.gz/MD5E-s186912--171ca2e8eb793f188f9dbb1354186b74.nii.gz

BNU_1/sub-0025870/ses-2/mri/lpba40_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025870/ses-2/mri/lpba40_sub-0025870_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025870/ses-2/mri/m0wp1sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/zW/MD5E-s2572894--6a6b20300aaa586c6500fa88c883b9ed.nii.gz/MD5E-s2572894--6a6b20300aaa586c6500fa88c883b9ed.nii.gz

BNU_1/sub-0025870/ses-2/mri/m0wp2sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g9/z6/MD5E-s2273683--3cd7281d8c309f7840e89a6d0995cbdc.nii.gz/MD5E-s2273683--3cd7281d8c309f7840e89a6d0995cbdc.nii.gz

BNU_1/sub-0025870/ses-2/mri/m0wp3sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/GZ/MD5E-s2363825--99888667280cdd9634d8920080123ebc.nii.gz/MD5E-s2363825--99888667280cdd9634d8920080123ebc.nii.gz

BNU_1/sub-0025870/ses-2/mri/mori_sub-0025870_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025870/ses-2/mri/mori_sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/KJ/MD5E-s164026--bcdb18913330405d4a367cbdeec0d9cd.nii.gz/MD5E-s164026--bcdb18913330405d4a367cbdeec0d9cd.nii.gz

BNU_1/sub-0025870/ses-2/mri/mwp1sub-0025870_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025870/ses-2/mri/mwp2sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025870/ses-2/mri/mwp3sub-0025870_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025870/ses-2/mri/neuromorphometrics_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025870/ses-2/mri/neuromorphometrics_sub-0025870_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025870/ses-2/mri/p0sub-0025870_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/zw/MD5E-s786628--bde85fc3f061ee4fdbe15da9891fb8d8.nii.gz/MD5E-s786628--bde85fc3f061ee4fdbe15da9891fb8d8.nii.gz

BNU_1/sub-0025870/ses-2/mri/p1sub-0025870_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025870/ses-2/mri/p2sub-0025870_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025870/ses-2/mri/p3sub-0025870_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025870/ses-2/mri/rp1sub-0025870_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025870/ses-2/mri/rp2sub-0025870_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025870/ses-2/mri/rp3sub-0025870_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025870/ses-2/mri/t_sub-0025870_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/7w/MD5E-s284--58c1e7d3f67b06cfdec361b1f1e4976c.mat/MD5E-s284--58c1e7d3f67b06cfdec361b1f1e4976c.mat

BNU_1/sub-0025870/ses-2/mri/t_sub-0025870_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025870/ses-2/mri/thalamus_sub-0025870_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025870/ses-2/mri/thalamus_sub-0025870_ses-2_run-1_T1w.nii.gz

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