[DATALAD RUNCMD] Compute SWU_4/sub-0025737/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025737/ses-2/anat/sub-0025737_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025737/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025737/ses-2/label/catROI_sub-0025737_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/j9/MD5E-s57845--ff4fc8a0903cbbaafafa92a1d333c2c3.mat/MD5E-s57845--ff4fc8a0903cbbaafafa92a1d333c2c3.mat

SWU_4/sub-0025737/ses-2/label/catROI_sub-0025737_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/0X/MD5E-s188556--a35b5dd4992a3bdc813153c4109f157d.xml/MD5E-s188556--a35b5dd4992a3bdc813153c4109f157d.xml

SWU_4/sub-0025737/ses-2/label/catROIs_sub-0025737_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/50/87/MD5E-s120151--640a94aef669201463b1433e288d1376.mat/MD5E-s120151--640a94aef669201463b1433e288d1376.mat

SWU_4/sub-0025737/ses-2/label/catROIs_sub-0025737_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/kp/MD5E-s332127--38dd417169dba85b99ecf13845ee4e22.xml/MD5E-s332127--38dd417169dba85b99ecf13845ee4e22.xml

SWU_4/sub-0025737/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025737/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/43/k4/MD5E-s161176--382147f40a9e94709fb9f4bdc0a151e7.nii.gz/MD5E-s161176--382147f40a9e94709fb9f4bdc0a151e7.nii.gz

SWU_4/sub-0025737/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025737/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/84/MD5E-s180144--7aa94f7087dab8d6189acca768f298bb.nii.gz/MD5E-s180144--7aa94f7087dab8d6189acca768f298bb.nii.gz

SWU_4/sub-0025737/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025737/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/V5/MD5E-s241697--f028bbd8108862fafd76de47c86f0011.nii.gz/MD5E-s241697--f028bbd8108862fafd76de47c86f0011.nii.gz

SWU_4/sub-0025737/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025737/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/9P/MD5E-s269438--e6a036e28431042e64e7d3d45558a0f9.nii.gz/MD5E-s269438--e6a036e28431042e64e7d3d45558a0f9.nii.gz

SWU_4/sub-0025737/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025737/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K2/4z/MD5E-s24145--1ccddd1aa2df2945a6d3d4cde709db36.nii.gz/MD5E-s24145--1ccddd1aa2df2945a6d3d4cde709db36.nii.gz

SWU_4/sub-0025737/ses-2/mri/aal3_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025737/ses-2/mri/aal3_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/m1/MD5E-s183140--e8ba70b8fd1fb68c2075fd144352a2b2.nii.gz/MD5E-s183140--e8ba70b8fd1fb68c2075fd144352a2b2.nii.gz

SWU_4/sub-0025737/ses-2/mri/anatomy3_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025737/ses-2/mri/anatomy3_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/5G/MD5E-s132526--4edf35b1a43df5f707730fccb6253776.nii.gz/MD5E-s132526--4edf35b1a43df5f707730fccb6253776.nii.gz

SWU_4/sub-0025737/ses-2/mri/anon_misub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7P/FM/MD5E-s8127429--5b302f87dc52be2a72fb8bb9d072c1c2.nii.gz/MD5E-s8127429--5b302f87dc52be2a72fb8bb9d072c1c2.nii.gz

SWU_4/sub-0025737/ses-2/mri/anon_msub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/71/MD5E-s7559693--87d9bd155b5806b271f6d3a6fbd7e4bc.nii.gz/MD5E-s7559693--87d9bd155b5806b271f6d3a6fbd7e4bc.nii.gz

SWU_4/sub-0025737/ses-2/mri/cat_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pM/4z/MD5E-s97315--930b62972fc1b4720c806818663325d6.nii.gz/MD5E-s97315--930b62972fc1b4720c806818663325d6.nii.gz

SWU_4/sub-0025737/ses-2/mri/cobra_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025737/ses-2/mri/cobra_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/xZ/MD5E-s48051--67930350a4a3efa9ad305de876da8beb.nii.gz/MD5E-s48051--67930350a4a3efa9ad305de876da8beb.nii.gz

SWU_4/sub-0025737/ses-2/mri/hammers_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025737/ses-2/mri/hammers_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/Kf/MD5E-s142435--e9cf54f0b0f7282c333024940b94b9d7.nii.gz/MD5E-s142435--e9cf54f0b0f7282c333024940b94b9d7.nii.gz

SWU_4/sub-0025737/ses-2/mri/ibsr_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025737/ses-2/mri/ibsr_sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fj/ZQ/MD5E-s153123--5a069f09608f3c37cb1885a89c70fe96.nii.gz/MD5E-s153123--5a069f09608f3c37cb1885a89c70fe96.nii.gz

SWU_4/sub-0025737/ses-2/mri/it_sub-0025737_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/15/pq/MD5E-s282--4175d338d685e1248cf26edb36ca0b7b.mat/MD5E-s282--4175d338d685e1248cf26edb36ca0b7b.mat

SWU_4/sub-0025737/ses-2/mri/it_sub-0025737_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/Kq/MD5E-s284--31008387867d6145b7268cd301166409.mat/MD5E-s284--31008387867d6145b7268cd301166409.mat

SWU_4/sub-0025737/ses-2/mri/iy_sub-0025737_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/k8/gV/MD5E-s44765232--5bd7b6e461886f374cdfb3f8d9d44c63.nii.gz/MD5E-s44765232--5bd7b6e461886f374cdfb3f8d9d44c63.nii.gz

SWU_4/sub-0025737/ses-2/mri/julichbrain_sub-0025737_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025737/ses-2/mri/julichbrain_sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/lpba40_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025737/ses-2/mri/lpba40_sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/m0wp1sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/3x/MD5E-s2578095--413db4ec88c5a22d50a9cbba5e573828.nii.gz/MD5E-s2578095--413db4ec88c5a22d50a9cbba5e573828.nii.gz

SWU_4/sub-0025737/ses-2/mri/m0wp2sub-0025737_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025737/ses-2/mri/m0wp3sub-0025737_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Xq/xj/MD5E-s2430666--4e999d23f7500a6c46c7c02339c30922.nii.gz/MD5E-s2430666--4e999d23f7500a6c46c7c02339c30922.nii.gz

SWU_4/sub-0025737/ses-2/mri/mori_sub-0025737_ses-2_run-1_T1w.csv

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SWU_4/sub-0025737/ses-2/mri/mori_sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/mwp1sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/mwp2sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/mwp3sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/neuromorphometrics_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025737/ses-2/mri/neuromorphometrics_sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/p0sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/p1sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/p2sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/p3sub-0025737_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025737/ses-2/mri/rp1sub-0025737_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025737/ses-2/mri/rp2sub-0025737_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025737/ses-2/mri/rp3sub-0025737_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025737/ses-2/mri/t_sub-0025737_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025737/ses-2/mri/t_sub-0025737_ses-2_run-1_T1w_rigid_reorient.mat

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SWU_4/sub-0025737/ses-2/mri/thalamus_sub-0025737_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025737/ses-2/mri/thalamus_sub-0025737_ses-2_run-1_T1w.nii.gz

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