[DATALAD RUNCMD] Compute SWU_4/sub-0025776/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025776/ses-2/anat/sub-0025776_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025776/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025776/ses-2/label/catROI_sub-0025776_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/M3/MD5E-s57929--1c90c0e80fbb9c388c4eacb6667bb231.mat/MD5E-s57929--1c90c0e80fbb9c388c4eacb6667bb231.mat

SWU_4/sub-0025776/ses-2/label/catROI_sub-0025776_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/MX/MD5E-s188697--2c1555ed6597e7cd6a8fa4519f77c453.xml/MD5E-s188697--2c1555ed6597e7cd6a8fa4519f77c453.xml

SWU_4/sub-0025776/ses-2/label/catROIs_sub-0025776_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mq/WG/MD5E-s120110--d0e3f4225d1e0cf44cdaef7947ba5d11.mat/MD5E-s120110--d0e3f4225d1e0cf44cdaef7947ba5d11.mat

SWU_4/sub-0025776/ses-2/label/catROIs_sub-0025776_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/Px/MD5E-s332194--4815b653c4195f7e61f0dda813ce7b2b.xml/MD5E-s332194--4815b653c4195f7e61f0dda813ce7b2b.xml

SWU_4/sub-0025776/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025776/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V5/83/MD5E-s169634--de1352c31ee5f6262ae02fc66b12d61c.nii.gz/MD5E-s169634--de1352c31ee5f6262ae02fc66b12d61c.nii.gz

SWU_4/sub-0025776/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025776/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/pX/MD5E-s189170--6a57293cb0b99dfa9fd8e952fbd99807.nii.gz/MD5E-s189170--6a57293cb0b99dfa9fd8e952fbd99807.nii.gz

SWU_4/sub-0025776/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025776/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/Mv/MD5E-s256077--4e6d713939ee76957e6d7f36e7c6f327.nii.gz/MD5E-s256077--4e6d713939ee76957e6d7f36e7c6f327.nii.gz

SWU_4/sub-0025776/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025776/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/wv/MD5E-s283516--d37fbe28ec280409299930a02abedcd8.nii.gz/MD5E-s283516--d37fbe28ec280409299930a02abedcd8.nii.gz

SWU_4/sub-0025776/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025776/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/4Q/MD5E-s24961--17519998e834092170231cc90f2faa08.nii.gz/MD5E-s24961--17519998e834092170231cc90f2faa08.nii.gz

SWU_4/sub-0025776/ses-2/mri/aal3_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025776/ses-2/mri/aal3_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x4/gF/MD5E-s190336--e9ed4cd6187a0e678b779a73fd655e11.nii.gz/MD5E-s190336--e9ed4cd6187a0e678b779a73fd655e11.nii.gz

SWU_4/sub-0025776/ses-2/mri/anatomy3_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025776/ses-2/mri/anatomy3_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/pV/MD5E-s139462--163054d1af66922fe7795406694e6c97.nii.gz/MD5E-s139462--163054d1af66922fe7795406694e6c97.nii.gz

SWU_4/sub-0025776/ses-2/mri/anon_misub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/1v/MD5E-s8935362--f25510d553dfddb02c5ed09db2bf22ca.nii.gz/MD5E-s8935362--f25510d553dfddb02c5ed09db2bf22ca.nii.gz

SWU_4/sub-0025776/ses-2/mri/anon_msub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/9g/MD5E-s8622105--28a28eb7d57f169aa9e559f0400aef4e.nii.gz/MD5E-s8622105--28a28eb7d57f169aa9e559f0400aef4e.nii.gz

SWU_4/sub-0025776/ses-2/mri/cat_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1z/fJ/MD5E-s104404--63d0ff5bf2065ff5580a4b5411f82fee.nii.gz/MD5E-s104404--63d0ff5bf2065ff5580a4b5411f82fee.nii.gz

SWU_4/sub-0025776/ses-2/mri/cobra_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025776/ses-2/mri/cobra_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/Vj/MD5E-s50597--ce016b21cdf35aec9ee280e39236fd59.nii.gz/MD5E-s50597--ce016b21cdf35aec9ee280e39236fd59.nii.gz

SWU_4/sub-0025776/ses-2/mri/hammers_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025776/ses-2/mri/hammers_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/zj/MD5E-s151353--fc44e89e1a925e90d0ece4aab0415e59.nii.gz/MD5E-s151353--fc44e89e1a925e90d0ece4aab0415e59.nii.gz

SWU_4/sub-0025776/ses-2/mri/ibsr_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025776/ses-2/mri/ibsr_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/p4/MD5E-s158299--d77c2cdd1c1afd70a87e518d00bb1f85.nii.gz/MD5E-s158299--d77c2cdd1c1afd70a87e518d00bb1f85.nii.gz

SWU_4/sub-0025776/ses-2/mri/it_sub-0025776_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/vF/MD5E-s284--26f25bcf7e0b1ca2e3030aca24bf685f.mat/MD5E-s284--26f25bcf7e0b1ca2e3030aca24bf685f.mat

SWU_4/sub-0025776/ses-2/mri/it_sub-0025776_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/zp/MD5E-s284--117b7635d46fcca337b6f702c4c4203e.mat/MD5E-s284--117b7635d46fcca337b6f702c4c4203e.mat

SWU_4/sub-0025776/ses-2/mri/iy_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j7/2F/MD5E-s47281603--7dda37546a58485d0e095b67f979cd01.nii.gz/MD5E-s47281603--7dda37546a58485d0e095b67f979cd01.nii.gz

SWU_4/sub-0025776/ses-2/mri/julichbrain_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025776/ses-2/mri/julichbrain_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/08/jP/MD5E-s204014--18214f88888c870e7e8ba1c4ebdd80ec.nii.gz/MD5E-s204014--18214f88888c870e7e8ba1c4ebdd80ec.nii.gz

SWU_4/sub-0025776/ses-2/mri/lpba40_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025776/ses-2/mri/lpba40_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/02/MD5E-s147797--d2b871ae08413b41b74a6956dec9fa89.nii.gz/MD5E-s147797--d2b871ae08413b41b74a6956dec9fa89.nii.gz

SWU_4/sub-0025776/ses-2/mri/m0wp1sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wk/47/MD5E-s2581045--f946e4deedf39497e00aa182e38f692f.nii.gz/MD5E-s2581045--f946e4deedf39497e00aa182e38f692f.nii.gz

SWU_4/sub-0025776/ses-2/mri/m0wp2sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/Xm/MD5E-s2348860--e4f15c9100ae47d9f3b7bea983dcf8d4.nii.gz/MD5E-s2348860--e4f15c9100ae47d9f3b7bea983dcf8d4.nii.gz

SWU_4/sub-0025776/ses-2/mri/m0wp3sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mf/ww/MD5E-s2490015--c23b3a0924cdeeffe34973ecd7296f0d.nii.gz/MD5E-s2490015--c23b3a0924cdeeffe34973ecd7296f0d.nii.gz

SWU_4/sub-0025776/ses-2/mri/mori_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025776/ses-2/mri/mori_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/g8/MD5E-s177082--c916e56af3dac73b3cc8831197b75856.nii.gz/MD5E-s177082--c916e56af3dac73b3cc8831197b75856.nii.gz

SWU_4/sub-0025776/ses-2/mri/mwp1sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/PP/MD5E-s2583365--718b1fda111a4ba76d1ef49200a34d88.nii.gz/MD5E-s2583365--718b1fda111a4ba76d1ef49200a34d88.nii.gz

SWU_4/sub-0025776/ses-2/mri/mwp2sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x4/qq/MD5E-s2345267--9a820894a9091a81a4a1a0971633f65e.nii.gz/MD5E-s2345267--9a820894a9091a81a4a1a0971633f65e.nii.gz

SWU_4/sub-0025776/ses-2/mri/mwp3sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/KV/MD5E-s2486076--9a643e971accfed48da21e21c8cc9928.nii.gz/MD5E-s2486076--9a643e971accfed48da21e21c8cc9928.nii.gz

SWU_4/sub-0025776/ses-2/mri/neuromorphometrics_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025776/ses-2/mri/neuromorphometrics_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025776/ses-2/mri/p0sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/Xk/MD5E-s676886--857038b51066519789d9140f3cba365a.nii.gz/MD5E-s676886--857038b51066519789d9140f3cba365a.nii.gz

SWU_4/sub-0025776/ses-2/mri/p1sub-0025776_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025776/ses-2/mri/p2sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025776/ses-2/mri/p3sub-0025776_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025776/ses-2/mri/rp1sub-0025776_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025776/ses-2/mri/rp2sub-0025776_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025776/ses-2/mri/rp3sub-0025776_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025776/ses-2/mri/t_sub-0025776_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025776/ses-2/mri/t_sub-0025776_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/kv/MD5E-s285--915a0635547be2058659f8744d3fe518.mat/MD5E-s285--915a0635547be2058659f8744d3fe518.mat

SWU_4/sub-0025776/ses-2/mri/thalamus_sub-0025776_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025776/ses-2/mri/thalamus_sub-0025776_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025776/ses-2/mri/wj_sub-0025776_ses-2_run-1_T1w.nii.gz

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