[DATALAD RUNCMD] Compute SWU_4/sub-0025811/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025811/ses-1/anat/sub-0025811_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025811/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025811/ses-1/label/catROI_sub-0025811_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/f4/MD5E-s57715--e6ee28b3631b5863d2fede3822fca241.mat/MD5E-s57715--e6ee28b3631b5863d2fede3822fca241.mat

SWU_4/sub-0025811/ses-1/label/catROI_sub-0025811_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8j/9w/MD5E-s188893--12f0f1b6694eeab93a0f1780d172b074.xml/MD5E-s188893--12f0f1b6694eeab93a0f1780d172b074.xml

SWU_4/sub-0025811/ses-1/label/catROIs_sub-0025811_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/jw/MD5E-s120040--dfc91b194b0bf6152c60a9f84c8ff067.mat/MD5E-s120040--dfc91b194b0bf6152c60a9f84c8ff067.mat

SWU_4/sub-0025811/ses-1/label/catROIs_sub-0025811_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/3K/MD5E-s332149--dce94231fde68479b121042ac90d7617.xml/MD5E-s332149--dce94231fde68479b121042ac90d7617.xml

SWU_4/sub-0025811/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025811/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mp/wj/MD5E-s154943--2363d4f897aa3e8de4907052862e60c0.nii.gz/MD5E-s154943--2363d4f897aa3e8de4907052862e60c0.nii.gz

SWU_4/sub-0025811/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025811/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/70/MD5E-s175040--98e1f7615d6769c86d86d6de3ad3facf.nii.gz/MD5E-s175040--98e1f7615d6769c86d86d6de3ad3facf.nii.gz

SWU_4/sub-0025811/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025811/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/kK/MD5E-s234296--fea385bbf16922634f3705b519389c4f.nii.gz/MD5E-s234296--fea385bbf16922634f3705b519389c4f.nii.gz

SWU_4/sub-0025811/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025811/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x8/p1/MD5E-s262166--d75884b6f1bae1590903e509e89f3a84.nii.gz/MD5E-s262166--d75884b6f1bae1590903e509e89f3a84.nii.gz

SWU_4/sub-0025811/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025811/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/MM/MD5E-s23969--e307f0e9f6d5eb982b4f69c85bd1b85c.nii.gz/MD5E-s23969--e307f0e9f6d5eb982b4f69c85bd1b85c.nii.gz

SWU_4/sub-0025811/ses-1/mri/aal3_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025811/ses-1/mri/aal3_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jw/pg/MD5E-s178841--8927e22f78055e46da32fb1b002ec0f4.nii.gz/MD5E-s178841--8927e22f78055e46da32fb1b002ec0f4.nii.gz

SWU_4/sub-0025811/ses-1/mri/anatomy3_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025811/ses-1/mri/anatomy3_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8j/5x/MD5E-s128923--328369b99c916e416197a4bf19431f49.nii.gz/MD5E-s128923--328369b99c916e416197a4bf19431f49.nii.gz

SWU_4/sub-0025811/ses-1/mri/anon_misub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kp/Qf/MD5E-s9117884--318bd72f0184521cd1cb59af5d609727.nii.gz/MD5E-s9117884--318bd72f0184521cd1cb59af5d609727.nii.gz

SWU_4/sub-0025811/ses-1/mri/anon_msub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g0/VK/MD5E-s10287652--c92a2d5164b614d9f453e235b9011441.nii.gz/MD5E-s10287652--c92a2d5164b614d9f453e235b9011441.nii.gz

SWU_4/sub-0025811/ses-1/mri/cat_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/Vk/MD5E-s95219--65d5d798379d898132d54e68d3eaf67e.nii.gz/MD5E-s95219--65d5d798379d898132d54e68d3eaf67e.nii.gz

SWU_4/sub-0025811/ses-1/mri/cobra_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025811/ses-1/mri/cobra_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z5/Wq/MD5E-s47260--10a1566e9c13fef2bb99f8eed115a30b.nii.gz/MD5E-s47260--10a1566e9c13fef2bb99f8eed115a30b.nii.gz

SWU_4/sub-0025811/ses-1/mri/hammers_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025811/ses-1/mri/hammers_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/28/MD5E-s139255--60ec7673723569e53b2cfc9417e33282.nii.gz/MD5E-s139255--60ec7673723569e53b2cfc9417e33282.nii.gz

SWU_4/sub-0025811/ses-1/mri/ibsr_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025811/ses-1/mri/ibsr_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/0G/MD5E-s148765--b1c1d4608304a30699e45d174693c112.nii.gz/MD5E-s148765--b1c1d4608304a30699e45d174693c112.nii.gz

SWU_4/sub-0025811/ses-1/mri/it_sub-0025811_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/mv/MD5E-s282--042afb231b6649e764c9e5716768a64e.mat/MD5E-s282--042afb231b6649e764c9e5716768a64e.mat

SWU_4/sub-0025811/ses-1/mri/it_sub-0025811_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wk/95/MD5E-s282--d06bc3a9c9b74cf0f3efe1a1f644cdd6.mat/MD5E-s282--d06bc3a9c9b74cf0f3efe1a1f644cdd6.mat

SWU_4/sub-0025811/ses-1/mri/iy_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/Mf/MD5E-s42584363--0b37d6dadbe526735309f680f20c661c.nii.gz/MD5E-s42584363--0b37d6dadbe526735309f680f20c661c.nii.gz

SWU_4/sub-0025811/ses-1/mri/julichbrain_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025811/ses-1/mri/julichbrain_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZF/j0/MD5E-s187263--79e8b07fe91281bfd3ed0c717ee4078f.nii.gz/MD5E-s187263--79e8b07fe91281bfd3ed0c717ee4078f.nii.gz

SWU_4/sub-0025811/ses-1/mri/lpba40_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025811/ses-1/mri/lpba40_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/2Z/MD5E-s137241--350fa0c766a1b916eb1bf8f85dfd64d5.nii.gz/MD5E-s137241--350fa0c766a1b916eb1bf8f85dfd64d5.nii.gz

SWU_4/sub-0025811/ses-1/mri/m0wp1sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WV/Zv/MD5E-s2579867--29eab7837fef50645f7bdb6dea9a943d.nii.gz/MD5E-s2579867--29eab7837fef50645f7bdb6dea9a943d.nii.gz

SWU_4/sub-0025811/ses-1/mri/m0wp2sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/5p/MD5E-s2309568--080855134ad13854137cda3a054ab435.nii.gz/MD5E-s2309568--080855134ad13854137cda3a054ab435.nii.gz

SWU_4/sub-0025811/ses-1/mri/m0wp3sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/m3/MD5E-s2522635--9c614d0b26995f5f680e05aa7270f82d.nii.gz/MD5E-s2522635--9c614d0b26995f5f680e05aa7270f82d.nii.gz

SWU_4/sub-0025811/ses-1/mri/mori_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025811/ses-1/mri/mori_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/kw/MD5E-s162871--f9ad9a906b5102b76d546cacea4d393b.nii.gz/MD5E-s162871--f9ad9a906b5102b76d546cacea4d393b.nii.gz

SWU_4/sub-0025811/ses-1/mri/mwp1sub-0025811_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025811/ses-1/mri/mwp2sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gG/Jj/MD5E-s2311034--96d07b9a519cf880e0b8c24a5a6710b5.nii.gz/MD5E-s2311034--96d07b9a519cf880e0b8c24a5a6710b5.nii.gz

SWU_4/sub-0025811/ses-1/mri/mwp3sub-0025811_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025811/ses-1/mri/neuromorphometrics_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025811/ses-1/mri/neuromorphometrics_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025811/ses-1/mri/p0sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/72/gX/MD5E-s593851--03988d74f95aa315d9f0aa457e57c4f6.nii.gz/MD5E-s593851--03988d74f95aa315d9f0aa457e57c4f6.nii.gz

SWU_4/sub-0025811/ses-1/mri/p1sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025811/ses-1/mri/p2sub-0025811_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025811/ses-1/mri/p3sub-0025811_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025811/ses-1/mri/rp1sub-0025811_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025811/ses-1/mri/rp2sub-0025811_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025811/ses-1/mri/rp3sub-0025811_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025811/ses-1/mri/t_sub-0025811_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025811/ses-1/mri/t_sub-0025811_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025811/ses-1/mri/thalamus_sub-0025811_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025811/ses-1/mri/thalamus_sub-0025811_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025811/ses-1/mri/wj_sub-0025811_ses-1_run-1_T1w.nii.gz

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