[DATALAD RUNCMD] Compute NYU_2/sub-0025117/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025117/ses-1/anat/sub-0025117_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025117/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025117/ses-1/label/catROI_sub-0025117_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/wW/MD5E-s58099--4d86b6ce935d69a6f69305a9529515f5.mat/MD5E-s58099--4d86b6ce935d69a6f69305a9529515f5.mat

NYU_2/sub-0025117/ses-1/label/catROI_sub-0025117_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F9/Mz/MD5E-s188780--51fb45512acf68d8e186ac4d5fdde130.xml/MD5E-s188780--51fb45512acf68d8e186ac4d5fdde130.xml

NYU_2/sub-0025117/ses-1/label/catROI_sub-0025117_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PM/j5/MD5E-s58126--22edee3e647c1eee46401c6083770f2c.mat/MD5E-s58126--22edee3e647c1eee46401c6083770f2c.mat

NYU_2/sub-0025117/ses-1/label/catROI_sub-0025117_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/j2/27/MD5E-s188856--35d715451b03ff45a7f61ac40a39840b.xml/MD5E-s188856--35d715451b03ff45a7f61ac40a39840b.xml

NYU_2/sub-0025117/ses-1/label/catROIs_sub-0025117_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/xf/MD5E-s120319--f59f284bce6e9517099467ac814766fc.mat/MD5E-s120319--f59f284bce6e9517099467ac814766fc.mat

NYU_2/sub-0025117/ses-1/label/catROIs_sub-0025117_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/F5/MD5E-s332129--3eced8eeb5d3e1dd95c55fdaa4a240f9.xml/MD5E-s332129--3eced8eeb5d3e1dd95c55fdaa4a240f9.xml

NYU_2/sub-0025117/ses-1/label/catROIs_sub-0025117_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/VV/wj/MD5E-s120326--7633c540804dca5d10313db33f11732d.mat/MD5E-s120326--7633c540804dca5d10313db33f11732d.mat

NYU_2/sub-0025117/ses-1/label/catROIs_sub-0025117_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Pf/5p/MD5E-s332169--cda5ccc1af6f4351b96172a2f8116c18.xml/MD5E-s332169--cda5ccc1af6f4351b96172a2f8116c18.xml

NYU_2/sub-0025117/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/fP/MD5E-s148039--eef77df646f48fe9e49ac48e10218526.nii.gz/MD5E-s148039--eef77df646f48fe9e49ac48e10218526.nii.gz

NYU_2/sub-0025117/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7K/Wm/MD5E-s147838--7f6795fcbf103f598f7b9d93240092eb.nii.gz/MD5E-s147838--7f6795fcbf103f598f7b9d93240092eb.nii.gz

NYU_2/sub-0025117/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X1/XJ/MD5E-s164371--aea2fa7b40ace277b7cfe5ee9a504d99.nii.gz/MD5E-s164371--aea2fa7b40ace277b7cfe5ee9a504d99.nii.gz

NYU_2/sub-0025117/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k9/FJ/MD5E-s164499--970b7214ff1b0ebd8201bc720fbd8300.nii.gz/MD5E-s164499--970b7214ff1b0ebd8201bc720fbd8300.nii.gz

NYU_2/sub-0025117/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/36/jZ/MD5E-s222186--bcadab6b1101f11764df64478294680f.nii.gz/MD5E-s222186--bcadab6b1101f11764df64478294680f.nii.gz

NYU_2/sub-0025117/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fm/V0/MD5E-s222662--7899d0774b0ce2897c3f31c22d7cf386.nii.gz/MD5E-s222662--7899d0774b0ce2897c3f31c22d7cf386.nii.gz

NYU_2/sub-0025117/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wx/xp/MD5E-s245698--24407329fefc58fa1401f53c1c4fbe80.nii.gz/MD5E-s245698--24407329fefc58fa1401f53c1c4fbe80.nii.gz

NYU_2/sub-0025117/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mx/fP/MD5E-s246273--269af5d9c23270eeabb27869a82a0c65.nii.gz/MD5E-s246273--269af5d9c23270eeabb27869a82a0c65.nii.gz

NYU_2/sub-0025117/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ww/8Z/MD5E-s19819--02224f85724e0ca18c50ebb1baf6a519.nii.gz/MD5E-s19819--02224f85724e0ca18c50ebb1baf6a519.nii.gz

NYU_2/sub-0025117/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/31/3Z/MD5E-s20040--314c55920bafa859bca4362a50c42f40.nii.gz/MD5E-s20040--314c55920bafa859bca4362a50c42f40.nii.gz

NYU_2/sub-0025117/ses-1/mri/aal3_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/Z3/MD5E-s166770--16fe54887ceaae7578f1a43c3f706620.nii.gz/MD5E-s166770--16fe54887ceaae7578f1a43c3f706620.nii.gz

NYU_2/sub-0025117/ses-1/mri/aal3_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JX/2f/MD5E-s167012--365b1472454b44b59cc6732c17742a81.nii.gz/MD5E-s167012--365b1472454b44b59cc6732c17742a81.nii.gz

NYU_2/sub-0025117/ses-1/mri/anatomy3_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/KX/MD5E-s117794--ceaf1b70cc3a3521a13b6fccf80a2f0a.nii.gz/MD5E-s117794--ceaf1b70cc3a3521a13b6fccf80a2f0a.nii.gz

NYU_2/sub-0025117/ses-1/mri/anatomy3_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fw/gk/MD5E-s118109--292720fb9b4e2c7442bd304bbd8499a6.nii.gz/MD5E-s118109--292720fb9b4e2c7442bd304bbd8499a6.nii.gz

NYU_2/sub-0025117/ses-1/mri/anon_misub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Z/Q2/MD5E-s3669498--9ea1059b1ca36d2764d882f0ab24d1a4.nii.gz/MD5E-s3669498--9ea1059b1ca36d2764d882f0ab24d1a4.nii.gz

NYU_2/sub-0025117/ses-1/mri/anon_misub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W5/0K/MD5E-s3676696--9291259de7ca51bab3e0b71791ef3042.nii.gz/MD5E-s3676696--9291259de7ca51bab3e0b71791ef3042.nii.gz

NYU_2/sub-0025117/ses-1/mri/anon_msub-0025117_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/5k/QF/MD5E-s7690414--54763d919fac580a6083e9c9e34b481e.nii.gz/MD5E-s7690414--54763d919fac580a6083e9c9e34b481e.nii.gz

NYU_2/sub-0025117/ses-1/mri/anon_msub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9j/kG/MD5E-s7635402--e7be97b5ac29320fae75860cbbec993d.nii.gz/MD5E-s7635402--e7be97b5ac29320fae75860cbbec993d.nii.gz

NYU_2/sub-0025117/ses-1/mri/cat_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/vV/MD5E-s89324--3474908f715b34cb73442c9b458e67fa.nii.gz/MD5E-s89324--3474908f715b34cb73442c9b458e67fa.nii.gz

NYU_2/sub-0025117/ses-1/mri/cat_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wX/Gp/MD5E-s90248--e1f0212aa7f21d784658d3952fe457eb.nii.gz/MD5E-s90248--e1f0212aa7f21d784658d3952fe457eb.nii.gz

NYU_2/sub-0025117/ses-1/mri/cobra_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mz/KG/MD5E-s40360--9ea47ee5029ce1e13bfaf0803507fd9a.nii.gz/MD5E-s40360--9ea47ee5029ce1e13bfaf0803507fd9a.nii.gz

NYU_2/sub-0025117/ses-1/mri/cobra_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xj/9Z/MD5E-s40432--97ac1fd506ef279b313a71784eccf1ad.nii.gz/MD5E-s40432--97ac1fd506ef279b313a71784eccf1ad.nii.gz

NYU_2/sub-0025117/ses-1/mri/hammers_sub-0025117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025117/ses-1/mri/hammers_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025117/ses-1/mri/ibsr_sub-0025117_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/ibsr_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025117/ses-1/mri/it_sub-0025117_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/gw/MD5E-s283--151d79069f583f3fa0b369e04c540300.mat/MD5E-s283--151d79069f583f3fa0b369e04c540300.mat

NYU_2/sub-0025117/ses-1/mri/it_sub-0025117_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/qg/MD5E-s284--777ba7e5766142d849ae3f59ca29e6f0.mat/MD5E-s284--777ba7e5766142d849ae3f59ca29e6f0.mat

NYU_2/sub-0025117/ses-1/mri/it_sub-0025117_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025117/ses-1/mri/it_sub-0025117_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025117/ses-1/mri/iy_sub-0025117_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/iy_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025117/ses-1/mri/julichbrain_sub-0025117_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/julichbrain_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025117/ses-1/mri/lpba40_sub-0025117_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/lpba40_sub-0025117_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025117/ses-1/mri/m0wp1sub-0025117_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/m0wp1sub-0025117_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/m0wp2sub-0025117_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/m0wp2sub-0025117_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/m0wp3sub-0025117_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/m0wp3sub-0025117_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/mori_sub-0025117_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/mori_sub-0025117_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/mwp1sub-0025117_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/mwp1sub-0025117_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025117/ses-1/mri/mwp2sub-0025117_ses-1_run-1_T1w.nii.gz

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