[DATALAD RUNCMD] Compute IPCAS_7/sub-0026096/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_7/sub-0026096/ses-1/anat/sub-0026096_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_7/sub-0026096/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_7/sub-0026096/ses-1/label/catROI_sub-0026096_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/ZQ/MD5E-s61340--5e78a7b745dc4a4cce32ce38c9f8b93c.mat/MD5E-s61340--5e78a7b745dc4a4cce32ce38c9f8b93c.mat

IPCAS_7/sub-0026096/ses-1/label/catROI_sub-0026096_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/z0/MD5E-s189126--305714d57c353f3c636567d13250f3fa.xml/MD5E-s189126--305714d57c353f3c636567d13250f3fa.xml

IPCAS_7/sub-0026096/ses-1/label/catROIs_sub-0026096_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/Gw/MD5E-s120095--e68cc442784536f3014bd2e85c9000b6.mat/MD5E-s120095--e68cc442784536f3014bd2e85c9000b6.mat

IPCAS_7/sub-0026096/ses-1/label/catROIs_sub-0026096_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/14/P8/MD5E-s332105--46441063818d581b16ab69022c53e008.xml/MD5E-s332105--46441063818d581b16ab69022c53e008.xml

IPCAS_7/sub-0026096/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_7/sub-0026096/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026096/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_7/sub-0026096/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mZ/x1/MD5E-s181902--339900f653d4d1ca4c8010d31f1f4ec8.nii.gz/MD5E-s181902--339900f653d4d1ca4c8010d31f1f4ec8.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_7/sub-0026096/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/jV/MD5E-s244907--e8f103899e9c861a94792b2b3eea0649.nii.gz/MD5E-s244907--e8f103899e9c861a94792b2b3eea0649.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_7/sub-0026096/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/V7/MD5E-s273134--84a92588af43c546dd91c7023a71ef18.nii.gz/MD5E-s273134--84a92588af43c546dd91c7023a71ef18.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026096/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/vf/MD5E-s24725--5f517483f6c6ff58b69b09b09dd2e61b.nii.gz/MD5E-s24725--5f517483f6c6ff58b69b09b09dd2e61b.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/aal3_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_7/sub-0026096/ses-1/mri/aal3_sub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K7/q9/MD5E-s183804--329bba597fac6b1b332f2e3eb769db65.nii.gz/MD5E-s183804--329bba597fac6b1b332f2e3eb769db65.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/anatomy3_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_7/sub-0026096/ses-1/mri/anatomy3_sub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/kJ/MD5E-s132357--7e695da1ba0f37093ff3d3ce071139a9.nii.gz/MD5E-s132357--7e695da1ba0f37093ff3d3ce071139a9.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/anon_misub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/K1/MD5E-s4715446--48d2f3eb1b223cefd4b004b8600e7575.nii.gz/MD5E-s4715446--48d2f3eb1b223cefd4b004b8600e7575.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/anon_msub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1m/X3/MD5E-s11000741--2597a6f092e57bc1eada74cd0c913b11.nii.gz/MD5E-s11000741--2597a6f092e57bc1eada74cd0c913b11.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/cat_sub-0026096_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/G0/17/MD5E-s96787--bab3bc92a831a2b98989bc25fa272071.nii.gz/MD5E-s96787--bab3bc92a831a2b98989bc25fa272071.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/cobra_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_7/sub-0026096/ses-1/mri/cobra_sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/hammers_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_7/sub-0026096/ses-1/mri/hammers_sub-0026096_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/FJ/kF/MD5E-s143496--16cb702617e7beee0dfb2128c1e22b69.nii.gz/MD5E-s143496--16cb702617e7beee0dfb2128c1e22b69.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/ibsr_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_7/sub-0026096/ses-1/mri/ibsr_sub-0026096_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/MQ/MD5E-s152727--5d342b004d03550c64e0955bb365d164.nii.gz/MD5E-s152727--5d342b004d03550c64e0955bb365d164.nii.gz

IPCAS_7/sub-0026096/ses-1/mri/it_sub-0026096_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/F7/MD5E-s282--b57c0ff14c2709af03293f84899ad053.mat/MD5E-s282--b57c0ff14c2709af03293f84899ad053.mat

IPCAS_7/sub-0026096/ses-1/mri/it_sub-0026096_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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IPCAS_7/sub-0026096/ses-1/mri/iy_sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/julichbrain_sub-0026096_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026096/ses-1/mri/julichbrain_sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/lpba40_sub-0026096_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026096/ses-1/mri/lpba40_sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/m0wp1sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/m0wp2sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/m0wp3sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/mori_sub-0026096_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026096/ses-1/mri/mori_sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/mwp1sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/mwp2sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/mwp3sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/neuromorphometrics_sub-0026096_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026096/ses-1/mri/neuromorphometrics_sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/p0sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/p1sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/p2sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/p3sub-0026096_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/rp1sub-0026096_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/rp2sub-0026096_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/rp3sub-0026096_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026096/ses-1/mri/t_sub-0026096_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026096/ses-1/mri/t_sub-0026096_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026096/ses-1/mri/thalamus_sub-0026096_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026096/ses-1/mri/thalamus_sub-0026096_ses-1_run-1_T1w.nii.gz

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