[DATALAD RUNCMD] Compute SWU_4/sub-0025669/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025669/ses-2/anat/sub-0025669_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025669/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025669/ses-2/label/catROI_sub-0025669_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/q0/MD5E-s61289--174a4c1931e9a06393b533403ab6e407.mat/MD5E-s61289--174a4c1931e9a06393b533403ab6e407.mat

SWU_4/sub-0025669/ses-2/label/catROI_sub-0025669_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5F/mG/MD5E-s188811--c6d62b955c41f3c699b0e7210fb47034.xml/MD5E-s188811--c6d62b955c41f3c699b0e7210fb47034.xml

SWU_4/sub-0025669/ses-2/label/catROIs_sub-0025669_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5M/vM/MD5E-s120067--a1e11f0cf36c3366d4bf2d0d00c9de54.mat/MD5E-s120067--a1e11f0cf36c3366d4bf2d0d00c9de54.mat

SWU_4/sub-0025669/ses-2/label/catROIs_sub-0025669_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/0G/MD5E-s332108--d4aca031581608a863abbe5191f96602.xml/MD5E-s332108--d4aca031581608a863abbe5191f96602.xml

SWU_4/sub-0025669/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025669/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/xG/MD5E-s168819--8a591caf6c5cf8959dd392d9da127a4b.nii.gz/MD5E-s168819--8a591caf6c5cf8959dd392d9da127a4b.nii.gz

SWU_4/sub-0025669/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025669/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F6/3M/MD5E-s187988--8ece5d8507db24dd9b7459bd540ac87f.nii.gz/MD5E-s187988--8ece5d8507db24dd9b7459bd540ac87f.nii.gz

SWU_4/sub-0025669/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025669/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9J/xM/MD5E-s256172--b37125eea3d222d4a72764176e0470de.nii.gz/MD5E-s256172--b37125eea3d222d4a72764176e0470de.nii.gz

SWU_4/sub-0025669/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025669/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2J/0M/MD5E-s284205--b8068427aceafd6763b2e08971429d17.nii.gz/MD5E-s284205--b8068427aceafd6763b2e08971429d17.nii.gz

SWU_4/sub-0025669/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025669/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/pv/MD5E-s25420--58bd6fe72d070eac201b7c90be13bd5c.nii.gz/MD5E-s25420--58bd6fe72d070eac201b7c90be13bd5c.nii.gz

SWU_4/sub-0025669/ses-2/mri/aal3_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025669/ses-2/mri/aal3_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xq/0m/MD5E-s190442--9d9f1ad513a9c56c30a64c64db23b3a1.nii.gz/MD5E-s190442--9d9f1ad513a9c56c30a64c64db23b3a1.nii.gz

SWU_4/sub-0025669/ses-2/mri/anatomy3_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025669/ses-2/mri/anatomy3_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/WF/MD5E-s139136--bc74c758fa7e9cf6e1e83742a167015c.nii.gz/MD5E-s139136--bc74c758fa7e9cf6e1e83742a167015c.nii.gz

SWU_4/sub-0025669/ses-2/mri/anon_misub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/1G/MD5E-s9390919--137eda7d5aef8174d3bb0f1cfaba25d5.nii.gz/MD5E-s9390919--137eda7d5aef8174d3bb0f1cfaba25d5.nii.gz

SWU_4/sub-0025669/ses-2/mri/anon_msub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/67/MD5E-s9586347--d85e888c28c40791511ab11547c832dc.nii.gz/MD5E-s9586347--d85e888c28c40791511ab11547c832dc.nii.gz

SWU_4/sub-0025669/ses-2/mri/cat_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/WJ/MD5E-s100614--3cfec2ee9f90b3d4d087553292b79ffa.nii.gz/MD5E-s100614--3cfec2ee9f90b3d4d087553292b79ffa.nii.gz

SWU_4/sub-0025669/ses-2/mri/cobra_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025669/ses-2/mri/cobra_sub-0025669_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/WW/X6/MD5E-s49872--9ea5a4cdebc39233e1f8937d55628cd8.nii.gz/MD5E-s49872--9ea5a4cdebc39233e1f8937d55628cd8.nii.gz

SWU_4/sub-0025669/ses-2/mri/hammers_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025669/ses-2/mri/hammers_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/P8/MD5E-s151702--92ce2ff834d18dc3551e3808510be3e6.nii.gz/MD5E-s151702--92ce2ff834d18dc3551e3808510be3e6.nii.gz

SWU_4/sub-0025669/ses-2/mri/ibsr_sub-0025669_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025669/ses-2/mri/ibsr_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fz/v8/MD5E-s158061--533e62b94ed2d0d24bc4fc4fde89359a.nii.gz/MD5E-s158061--533e62b94ed2d0d24bc4fc4fde89359a.nii.gz

SWU_4/sub-0025669/ses-2/mri/it_sub-0025669_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kg/x6/MD5E-s282--1ec9283c9ed98266c11b27b390c907a0.mat/MD5E-s282--1ec9283c9ed98266c11b27b390c907a0.mat

SWU_4/sub-0025669/ses-2/mri/it_sub-0025669_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/VW/MD5E-s283--94aaefa778c7c69204941422c8675d05.mat/MD5E-s283--94aaefa778c7c69204941422c8675d05.mat

SWU_4/sub-0025669/ses-2/mri/iy_sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025669/ses-2/mri/julichbrain_sub-0025669_ses-2_run-1_T1w.csv

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SWU_4/sub-0025669/ses-2/mri/julichbrain_sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/lpba40_sub-0025669_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025669/ses-2/mri/lpba40_sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/m0wp1sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4z/GQ/MD5E-s2582758--16c2c315f0c8090046a090e4a4353e69.nii.gz/MD5E-s2582758--16c2c315f0c8090046a090e4a4353e69.nii.gz

SWU_4/sub-0025669/ses-2/mri/m0wp2sub-0025669_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/m9/MD5E-s2302804--e86734a6b18c480f2ababc4512a20f2b.nii.gz/MD5E-s2302804--e86734a6b18c480f2ababc4512a20f2b.nii.gz

SWU_4/sub-0025669/ses-2/mri/m0wp3sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/mori_sub-0025669_ses-2_run-1_T1w.csv

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SWU_4/sub-0025669/ses-2/mri/mori_sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/mwp1sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/mwp2sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/mwp3sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/neuromorphometrics_sub-0025669_ses-2_run-1_T1w.csv

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SWU_4/sub-0025669/ses-2/mri/neuromorphometrics_sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/p0sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/p1sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/p2sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/p3sub-0025669_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025669/ses-2/mri/rp1sub-0025669_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025669/ses-2/mri/rp2sub-0025669_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025669/ses-2/mri/rp3sub-0025669_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025669/ses-2/mri/t_sub-0025669_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025669/ses-2/mri/t_sub-0025669_ses-2_run-1_T1w_rigid_reorient.mat

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SWU_4/sub-0025669/ses-2/mri/thalamus_sub-0025669_ses-2_run-1_T1w.csv

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SWU_4/sub-0025669/ses-2/mri/thalamus_sub-0025669_ses-2_run-1_T1w.nii.gz

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