[DATALAD RUNCMD] Compute XHCUMS/sub-0025985/ses-4

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/XHCUMS/sub-0025985/ses-4/anat/sub-0025985_ses-4_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "XHCUMS/sub-0025985/ses-4"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

XHCUMS/sub-0025985/ses-4/label/catROI_sub-0025985_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/M9/MD5E-s61351--5d2841fd405a1eb14c30ba3b71eb44d4.mat/MD5E-s61351--5d2841fd405a1eb14c30ba3b71eb44d4.mat

XHCUMS/sub-0025985/ses-4/label/catROI_sub-0025985_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/w1/MD5E-s189640--e78ee6d2fc1c930ae7fb450948621982.xml/MD5E-s189640--e78ee6d2fc1c930ae7fb450948621982.xml

XHCUMS/sub-0025985/ses-4/label/catROIs_sub-0025985_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/Xx/MD5E-s120209--2e01b58ddee7a1ad7f9c412da6b58dcd.mat/MD5E-s120209--2e01b58ddee7a1ad7f9c412da6b58dcd.mat

XHCUMS/sub-0025985/ses-4/label/catROIs_sub-0025985_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/7J/MD5E-s332140--6c5071e646133964832fa3addf43f6b2.xml/MD5E-s332140--6c5071e646133964832fa3addf43f6b2.xml

XHCUMS/sub-0025985/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

XHCUMS/sub-0025985/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/kG/MD5E-s145749--980628960a75ea8b5a2a8ddd417e8210.nii.gz/MD5E-s145749--980628960a75ea8b5a2a8ddd417e8210.nii.gz

XHCUMS/sub-0025985/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

XHCUMS/sub-0025985/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/Z5/MD5E-s164067--ab8a763e6b7b2655d19035e7f181a598.nii.gz/MD5E-s164067--ab8a763e6b7b2655d19035e7f181a598.nii.gz

XHCUMS/sub-0025985/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

XHCUMS/sub-0025985/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/0w/MD5E-s222418--f82420041e8ea1b6e358a2ef4f88d0b8.nii.gz/MD5E-s222418--f82420041e8ea1b6e358a2ef4f88d0b8.nii.gz

XHCUMS/sub-0025985/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

XHCUMS/sub-0025985/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/kg/MD5E-s246836--b8a227f42e9981994fbfbdff3f67f11d.nii.gz/MD5E-s246836--b8a227f42e9981994fbfbdff3f67f11d.nii.gz

XHCUMS/sub-0025985/ses-4/mri/Tian_Subcortex_S2_7T_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025985/ses-4/mri/Tian_Subcortex_S2_7T_sub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5j/m8/MD5E-s23400--9fb98896f8e2aedd06eabbc06a5ea2aa.nii.gz/MD5E-s23400--9fb98896f8e2aedd06eabbc06a5ea2aa.nii.gz

XHCUMS/sub-0025985/ses-4/mri/aal3_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

XHCUMS/sub-0025985/ses-4/mri/aal3_sub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/3j/MD5E-s166911--82fdd453e9f88c9a110a669cdac16193.nii.gz/MD5E-s166911--82fdd453e9f88c9a110a669cdac16193.nii.gz

XHCUMS/sub-0025985/ses-4/mri/anatomy3_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

XHCUMS/sub-0025985/ses-4/mri/anatomy3_sub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/wK/MD5E-s121379--6d9500377a937cd2c31b4d79c0564eef.nii.gz/MD5E-s121379--6d9500377a937cd2c31b4d79c0564eef.nii.gz

XHCUMS/sub-0025985/ses-4/mri/anon_misub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/zk/MD5E-s8688311--cf22255fa176a0420e28bf96d2000bc6.nii.gz/MD5E-s8688311--cf22255fa176a0420e28bf96d2000bc6.nii.gz

XHCUMS/sub-0025985/ses-4/mri/anon_msub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/W9/MD5E-s9552317--7563bd392f19f92dbd2d95a7efa961fb.nii.gz/MD5E-s9552317--7563bd392f19f92dbd2d95a7efa961fb.nii.gz

XHCUMS/sub-0025985/ses-4/mri/cat_sub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/m0/MD5E-s93307--78eb1713900ebdd52d8827371a0153e7.nii.gz/MD5E-s93307--78eb1713900ebdd52d8827371a0153e7.nii.gz

XHCUMS/sub-0025985/ses-4/mri/cobra_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

XHCUMS/sub-0025985/ses-4/mri/cobra_sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/hammers_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

XHCUMS/sub-0025985/ses-4/mri/hammers_sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/ibsr_sub-0025985_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

XHCUMS/sub-0025985/ses-4/mri/ibsr_sub-0025985_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xw/1P/MD5E-s139325--732881df74d1800902775086ecb87299.nii.gz/MD5E-s139325--732881df74d1800902775086ecb87299.nii.gz

XHCUMS/sub-0025985/ses-4/mri/it_sub-0025985_ses-4_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/J3/MD5E-s283--6e661321a21906e01e299833afbaa631.mat/MD5E-s283--6e661321a21906e01e299833afbaa631.mat

XHCUMS/sub-0025985/ses-4/mri/it_sub-0025985_ses-4_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m9/6v/MD5E-s284--4fb046756a918ee9b869c6ecfb0cf997.mat/MD5E-s284--4fb046756a918ee9b869c6ecfb0cf997.mat

XHCUMS/sub-0025985/ses-4/mri/iy_sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/julichbrain_sub-0025985_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025985/ses-4/mri/julichbrain_sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/lpba40_sub-0025985_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025985/ses-4/mri/lpba40_sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/m0wp1sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/m0wp2sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/m0wp3sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/mori_sub-0025985_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025985/ses-4/mri/mori_sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/mwp1sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/mwp2sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/mwp3sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/neuromorphometrics_sub-0025985_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025985/ses-4/mri/neuromorphometrics_sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/p0sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/p1sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/p2sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/p3sub-0025985_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/rp1sub-0025985_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/rp2sub-0025985_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/rp3sub-0025985_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025985/ses-4/mri/t_sub-0025985_ses-4_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0025985/ses-4/mri/t_sub-0025985_ses-4_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0025985/ses-4/mri/thalamus_sub-0025985_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025985/ses-4/mri/thalamus_sub-0025985_ses-4_run-1_T1w.nii.gz

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