[DATALAD RUNCMD] Compute SWU_4/sub-0025636/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025636/ses-2/anat/sub-0025636_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025636/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025636/ses-2/label/catROI_sub-0025636_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/M6/MD5E-s61335--48484d04a5914ba5a30ceb16927094a0.mat/MD5E-s61335--48484d04a5914ba5a30ceb16927094a0.mat

SWU_4/sub-0025636/ses-2/label/catROI_sub-0025636_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m9/mQ/MD5E-s188808--a52c462795fe54740de9e67213b62098.xml/MD5E-s188808--a52c462795fe54740de9e67213b62098.xml

SWU_4/sub-0025636/ses-2/label/catROIs_sub-0025636_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/75/MD5E-s120003--841877ad437001f813a670e75b46954f.mat/MD5E-s120003--841877ad437001f813a670e75b46954f.mat

SWU_4/sub-0025636/ses-2/label/catROIs_sub-0025636_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f8/z5/MD5E-s332162--f4b4faef2e6c68365cd0c7d870ac796a.xml/MD5E-s332162--f4b4faef2e6c68365cd0c7d870ac796a.xml

SWU_4/sub-0025636/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025636/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5M/1p/MD5E-s176435--59f75d2d30a186fcc6472622a5180506.nii.gz/MD5E-s176435--59f75d2d30a186fcc6472622a5180506.nii.gz

SWU_4/sub-0025636/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025636/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/04/MD5E-s196546--781b5959d3ba8be193788c21dbf829bb.nii.gz/MD5E-s196546--781b5959d3ba8be193788c21dbf829bb.nii.gz

SWU_4/sub-0025636/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025636/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/K9/MD5E-s264527--f40655da99714420a0a36a368fdade55.nii.gz/MD5E-s264527--f40655da99714420a0a36a368fdade55.nii.gz

SWU_4/sub-0025636/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025636/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5m/qV/MD5E-s293417--462f9c39481217950ae71fc224f80136.nii.gz/MD5E-s293417--462f9c39481217950ae71fc224f80136.nii.gz

SWU_4/sub-0025636/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025636/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9f/fm/MD5E-s25222--6219347de16fcb332502d4173551bf23.nii.gz/MD5E-s25222--6219347de16fcb332502d4173551bf23.nii.gz

SWU_4/sub-0025636/ses-2/mri/aal3_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025636/ses-2/mri/aal3_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/4v/MD5E-s196313--83afa3c8e9db862c9f3fa1f2a8e298bb.nii.gz/MD5E-s196313--83afa3c8e9db862c9f3fa1f2a8e298bb.nii.gz

SWU_4/sub-0025636/ses-2/mri/anatomy3_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025636/ses-2/mri/anatomy3_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/fJ/MD5E-s142984--03210b357293951e0c5aa94faa804540.nii.gz/MD5E-s142984--03210b357293951e0c5aa94faa804540.nii.gz

SWU_4/sub-0025636/ses-2/mri/anon_misub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/wG/MD5E-s8852210--b9d2ba8a47b74da961bbe4615469e457.nii.gz/MD5E-s8852210--b9d2ba8a47b74da961bbe4615469e457.nii.gz

SWU_4/sub-0025636/ses-2/mri/anon_msub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/gK/MD5E-s8315829--daa3426bd1a7c4a054af2947522511b5.nii.gz/MD5E-s8315829--daa3426bd1a7c4a054af2947522511b5.nii.gz

SWU_4/sub-0025636/ses-2/mri/cat_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/wQ/MD5E-s102497--cf0b4924c95159fe1fc3cf8698e4948c.nii.gz/MD5E-s102497--cf0b4924c95159fe1fc3cf8698e4948c.nii.gz

SWU_4/sub-0025636/ses-2/mri/cobra_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025636/ses-2/mri/cobra_sub-0025636_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/w9/q6/MD5E-s48470--18b1e5198150549643d5ad4071837849.nii.gz/MD5E-s48470--18b1e5198150549643d5ad4071837849.nii.gz

SWU_4/sub-0025636/ses-2/mri/hammers_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025636/ses-2/mri/hammers_sub-0025636_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/62/Qm/MD5E-s153423--9c4a26a5fa2a3b92f710844c0ba0770b.nii.gz/MD5E-s153423--9c4a26a5fa2a3b92f710844c0ba0770b.nii.gz

SWU_4/sub-0025636/ses-2/mri/ibsr_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025636/ses-2/mri/ibsr_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/01/Q1/MD5E-s163044--e4015e64b115ebbfac0185a6b7be66a1.nii.gz/MD5E-s163044--e4015e64b115ebbfac0185a6b7be66a1.nii.gz

SWU_4/sub-0025636/ses-2/mri/it_sub-0025636_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/19/MD5E-s285--c145a8555d83914c037afda651be1ec3.mat/MD5E-s285--c145a8555d83914c037afda651be1ec3.mat

SWU_4/sub-0025636/ses-2/mri/it_sub-0025636_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FX/84/MD5E-s284--4d8a23dba60b0961b441d8ff1d600237.mat/MD5E-s284--4d8a23dba60b0961b441d8ff1d600237.mat

SWU_4/sub-0025636/ses-2/mri/iy_sub-0025636_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/50/81/MD5E-s48550279--1e30a61dd6911e635858e01f3129d2ed.nii.gz/MD5E-s48550279--1e30a61dd6911e635858e01f3129d2ed.nii.gz

SWU_4/sub-0025636/ses-2/mri/julichbrain_sub-0025636_ses-2_run-1_T1w.csv

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SWU_4/sub-0025636/ses-2/mri/julichbrain_sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/lpba40_sub-0025636_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025636/ses-2/mri/lpba40_sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/m0wp1sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/m0wp2sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/m0wp3sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/mori_sub-0025636_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025636/ses-2/mri/mori_sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/mwp1sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/mwp2sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/mwp3sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/neuromorphometrics_sub-0025636_ses-2_run-1_T1w.csv

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SWU_4/sub-0025636/ses-2/mri/neuromorphometrics_sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/p0sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/p1sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/p2sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/p3sub-0025636_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025636/ses-2/mri/rp1sub-0025636_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025636/ses-2/mri/rp2sub-0025636_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025636/ses-2/mri/rp3sub-0025636_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025636/ses-2/mri/t_sub-0025636_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025636/ses-2/mri/t_sub-0025636_ses-2_run-1_T1w_rigid_reorient.mat

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SWU_4/sub-0025636/ses-2/mri/thalamus_sub-0025636_ses-2_run-1_T1w.csv

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SWU_4/sub-0025636/ses-2/mri/thalamus_sub-0025636_ses-2_run-1_T1w.nii.gz

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