[DATALAD RUNCMD] Compute Utah_1/sub-0026039/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/Utah_1/sub-0026039/ses-1/anat/sub-0026039_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "Utah_1/sub-0026039/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Utah_1/sub-0026039/ses-1/label/catROI_sub-0026039_ses-1_run-1_T1w.mat

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+../../../../.git/annex/objects/kg/G5/MD5E-s61444--812d209a3c0e401be5170e24e9d9d679.mat/MD5E-s61444--812d209a3c0e401be5170e24e9d9d679.mat

Utah_1/sub-0026039/ses-1/label/catROI_sub-0026039_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/fF/MD5E-s188969--34a1d1ee2ffdd3a288dc59ac8248e1b5.xml/MD5E-s188969--34a1d1ee2ffdd3a288dc59ac8248e1b5.xml

Utah_1/sub-0026039/ses-1/label/catROIs_sub-0026039_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/Vx/MD5E-s120068--8441aa64ba595fea4ee90532591ca8f3.mat/MD5E-s120068--8441aa64ba595fea4ee90532591ca8f3.mat

Utah_1/sub-0026039/ses-1/label/catROIs_sub-0026039_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/vF/MD5E-s332127--8ed9af79082521fda509f4c09a198850.xml/MD5E-s332127--8ed9af79082521fda509f4c09a198850.xml

Utah_1/sub-0026039/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Utah_1/sub-0026039/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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Utah_1/sub-0026039/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Utah_1/sub-0026039/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/ZJ/MD5E-s477321--1c19e6f7a2733b3c86de013c73fcdbaa.nii.gz/MD5E-s477321--1c19e6f7a2733b3c86de013c73fcdbaa.nii.gz

Utah_1/sub-0026039/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Utah_1/sub-0026039/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/Gp/MD5E-s685088--dfc45b4e05f7dee0279ea066701ed533.nii.gz/MD5E-s685088--dfc45b4e05f7dee0279ea066701ed533.nii.gz

Utah_1/sub-0026039/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Utah_1/sub-0026039/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PZ/8z/MD5E-s753416--e60503e13a8d8c1a77a9dc2fba555477.nii.gz/MD5E-s753416--e60503e13a8d8c1a77a9dc2fba555477.nii.gz

Utah_1/sub-0026039/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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Utah_1/sub-0026039/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026039_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/P5/w7/MD5E-s72260--190ea80f31e8cc4dcfecd9ca8cb73633.nii.gz/MD5E-s72260--190ea80f31e8cc4dcfecd9ca8cb73633.nii.gz

Utah_1/sub-0026039/ses-1/mri/aal3_sub-0026039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Utah_1/sub-0026039/ses-1/mri/aal3_sub-0026039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/2Z/MD5E-s490889--504df45d1ce12dbd56409cc553b06cc4.nii.gz/MD5E-s490889--504df45d1ce12dbd56409cc553b06cc4.nii.gz

Utah_1/sub-0026039/ses-1/mri/anatomy3_sub-0026039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Utah_1/sub-0026039/ses-1/mri/anatomy3_sub-0026039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/8z/MD5E-s358290--a29e7ab44a69a232adf3e7767f27f169.nii.gz/MD5E-s358290--a29e7ab44a69a232adf3e7767f27f169.nii.gz

Utah_1/sub-0026039/ses-1/mri/anon_misub-0026039_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/6W/7V/MD5E-s21674916--35079b55fc247988b0cb1240bb69e802.nii.gz/MD5E-s21674916--35079b55fc247988b0cb1240bb69e802.nii.gz

Utah_1/sub-0026039/ses-1/mri/anon_msub-0026039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/5J/MD5E-s34316642--b1ed8761b35490e53df23e204e8c9537.nii.gz/MD5E-s34316642--b1ed8761b35490e53df23e204e8c9537.nii.gz

Utah_1/sub-0026039/ses-1/mri/cat_sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/cobra_sub-0026039_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Utah_1/sub-0026039/ses-1/mri/cobra_sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/hammers_sub-0026039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Utah_1/sub-0026039/ses-1/mri/hammers_sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/ibsr_sub-0026039_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Utah_1/sub-0026039/ses-1/mri/ibsr_sub-0026039_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/95/MD5E-s412077--b7c9130c83c538bfeee0b81253680041.nii.gz/MD5E-s412077--b7c9130c83c538bfeee0b81253680041.nii.gz

Utah_1/sub-0026039/ses-1/mri/it_sub-0026039_ses-1_run-1_T1w_affine_reorient.mat

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+../../../../.git/annex/objects/Gp/1v/MD5E-s283--d0628e51e5afdb978def18c6b522745c.mat/MD5E-s283--d0628e51e5afdb978def18c6b522745c.mat

Utah_1/sub-0026039/ses-1/mri/it_sub-0026039_ses-1_run-1_T1w_rigid_reorient.mat

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Utah_1/sub-0026039/ses-1/mri/iy_sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/julichbrain_sub-0026039_ses-1_run-1_T1w.csv

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Utah_1/sub-0026039/ses-1/mri/julichbrain_sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/lpba40_sub-0026039_ses-1_run-1_T1w.csv

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Utah_1/sub-0026039/ses-1/mri/lpba40_sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/m0wp1sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/m0wp2sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/m0wp3sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/mori_sub-0026039_ses-1_run-1_T1w.csv

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Utah_1/sub-0026039/ses-1/mri/mori_sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/mwp1sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/mwp2sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/mwp3sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/neuromorphometrics_sub-0026039_ses-1_run-1_T1w.csv

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Utah_1/sub-0026039/ses-1/mri/neuromorphometrics_sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/p0sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/p1sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/p2sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/p3sub-0026039_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026039/ses-1/mri/rp1sub-0026039_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026039/ses-1/mri/rp2sub-0026039_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026039/ses-1/mri/rp3sub-0026039_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026039/ses-1/mri/t_sub-0026039_ses-1_run-1_T1w_affine_reorient.mat

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Utah_1/sub-0026039/ses-1/mri/t_sub-0026039_ses-1_run-1_T1w_rigid_reorient.mat

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Utah_1/sub-0026039/ses-1/mri/thalamus_sub-0026039_ses-1_run-1_T1w.csv

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Utah_1/sub-0026039/ses-1/mri/thalamus_sub-0026039_ses-1_run-1_T1w.nii.gz

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