[DATALAD RUNCMD] Compute IPCAS_7/sub-0026080/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_7/sub-0026080/ses-1/anat/sub-0026080_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_7/sub-0026080/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_7/sub-0026080/ses-1/label/catROI_sub-0026080_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gj/Z3/MD5E-s61365--d6143a0f8ca574eb36b40d99a8d41192.mat/MD5E-s61365--d6143a0f8ca574eb36b40d99a8d41192.mat

IPCAS_7/sub-0026080/ses-1/label/catROI_sub-0026080_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/Ww/MD5E-s188967--96d5c907cecc144162d6239e2b471926.xml/MD5E-s188967--96d5c907cecc144162d6239e2b471926.xml

IPCAS_7/sub-0026080/ses-1/label/catROIs_sub-0026080_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/5f/MD5E-s119998--7c67ebcfd84d37135d5ebd94c1513d94.mat/MD5E-s119998--7c67ebcfd84d37135d5ebd94c1513d94.mat

IPCAS_7/sub-0026080/ses-1/label/catROIs_sub-0026080_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/9z/MD5E-s332111--7abfec4eaf19beb70ceff68f7c22d894.xml/MD5E-s332111--7abfec4eaf19beb70ceff68f7c22d894.xml

IPCAS_7/sub-0026080/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_7/sub-0026080/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pK/Xw/MD5E-s171089--18f719451c43418e9f1e159c26a2f28d.nii.gz/MD5E-s171089--18f719451c43418e9f1e159c26a2f28d.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_7/sub-0026080/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/9w/MD5E-s191094--a7714979b6f753d7af0a1286987bd8d9.nii.gz/MD5E-s191094--a7714979b6f753d7af0a1286987bd8d9.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_7/sub-0026080/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/X8/MD5E-s258728--918c60251661b8aa57601ec101e48029.nii.gz/MD5E-s258728--918c60251661b8aa57601ec101e48029.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_7/sub-0026080/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/w1/MD5E-s286635--1ec4f77ba0c0f9718458c3e730705a6f.nii.gz/MD5E-s286635--1ec4f77ba0c0f9718458c3e730705a6f.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026080/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P3/9Z/MD5E-s25195--3dcc2f1d49e69c4a5887ebf3c850de2e.nii.gz/MD5E-s25195--3dcc2f1d49e69c4a5887ebf3c850de2e.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/aal3_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_7/sub-0026080/ses-1/mri/aal3_sub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/v6/MD5E-s192732--0721c3c9c441cd5a267d7f81a841f10b.nii.gz/MD5E-s192732--0721c3c9c441cd5a267d7f81a841f10b.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/anatomy3_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_7/sub-0026080/ses-1/mri/anatomy3_sub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/qQ/MD5E-s140636--9e250365b7cb62d833e6d5761d71c103.nii.gz/MD5E-s140636--9e250365b7cb62d833e6d5761d71c103.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/anon_misub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/1j/MD5E-s4353959--054b9acbc9f09003f0fe6dc9804240ce.nii.gz/MD5E-s4353959--054b9acbc9f09003f0fe6dc9804240ce.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/anon_msub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wm/7X/MD5E-s10671756--3b1aed34e4d551ca50a547bf69995233.nii.gz/MD5E-s10671756--3b1aed34e4d551ca50a547bf69995233.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/cat_sub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/Zv/MD5E-s105689--bfba1ea940b76d97a205d2026d347245.nii.gz/MD5E-s105689--bfba1ea940b76d97a205d2026d347245.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/cobra_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_7/sub-0026080/ses-1/mri/cobra_sub-0026080_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/1j/v4/MD5E-s50727--a084fe634bc134b9bc8c28dc69b01b28.nii.gz/MD5E-s50727--a084fe634bc134b9bc8c28dc69b01b28.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/hammers_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_7/sub-0026080/ses-1/mri/hammers_sub-0026080_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/27/w0/MD5E-s153016--80eb54d2c7ef601fd21efefd1a03cc75.nii.gz/MD5E-s153016--80eb54d2c7ef601fd21efefd1a03cc75.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/ibsr_sub-0026080_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_7/sub-0026080/ses-1/mri/ibsr_sub-0026080_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/FQ/VF/MD5E-s159691--3b9b090c0f2895cee2cfd817afdc1a92.nii.gz/MD5E-s159691--3b9b090c0f2895cee2cfd817afdc1a92.nii.gz

IPCAS_7/sub-0026080/ses-1/mri/it_sub-0026080_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/x8/MD5E-s281--6308aa6706ce73a449ba75e2ff12e7aa.mat/MD5E-s281--6308aa6706ce73a449ba75e2ff12e7aa.mat

IPCAS_7/sub-0026080/ses-1/mri/it_sub-0026080_ses-1_run-1_T1w_rigid_reorient.mat

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+../../../../.git/annex/objects/Xx/KK/MD5E-s283--0bec10d686da14bcf0ede0c5e939e2c5.mat/MD5E-s283--0bec10d686da14bcf0ede0c5e939e2c5.mat

IPCAS_7/sub-0026080/ses-1/mri/iy_sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/julichbrain_sub-0026080_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026080/ses-1/mri/julichbrain_sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/lpba40_sub-0026080_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026080/ses-1/mri/lpba40_sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/m0wp1sub-0026080_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026080/ses-1/mri/m0wp2sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/m0wp3sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/mori_sub-0026080_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026080/ses-1/mri/mori_sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/mwp1sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/mwp2sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/mwp3sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/neuromorphometrics_sub-0026080_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026080/ses-1/mri/neuromorphometrics_sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/p0sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/p1sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/p2sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/p3sub-0026080_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/rp1sub-0026080_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/rp2sub-0026080_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/rp3sub-0026080_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026080/ses-1/mri/t_sub-0026080_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026080/ses-1/mri/t_sub-0026080_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026080/ses-1/mri/thalamus_sub-0026080_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026080/ses-1/mri/thalamus_sub-0026080_ses-1_run-1_T1w.nii.gz

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