[DATALAD RUNCMD] Compute SWU_4/sub-0025827/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025827/ses-2/anat/sub-0025827_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025827/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025827/ses-2/label/catROI_sub-0025827_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/MF/MD5E-s61347--115303e10c379a3d4aaca925cfb4474d.mat/MD5E-s61347--115303e10c379a3d4aaca925cfb4474d.mat

SWU_4/sub-0025827/ses-2/label/catROI_sub-0025827_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/jg/MD5E-s188969--bc7a058c73f01ff138dceef06969de76.xml/MD5E-s188969--bc7a058c73f01ff138dceef06969de76.xml

SWU_4/sub-0025827/ses-2/label/catROIs_sub-0025827_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zv/Xj/MD5E-s120248--a7230335ff6fdaae6ae80e722a16c6d4.mat/MD5E-s120248--a7230335ff6fdaae6ae80e722a16c6d4.mat

SWU_4/sub-0025827/ses-2/label/catROIs_sub-0025827_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/vx/MD5E-s332130--565875b21ba36d71bb73809d4dd75e98.xml/MD5E-s332130--565875b21ba36d71bb73809d4dd75e98.xml

SWU_4/sub-0025827/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025827/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/89/8K/MD5E-s161968--c40e119e4797bbbb89d5ddcd516c0c41.nii.gz/MD5E-s161968--c40e119e4797bbbb89d5ddcd516c0c41.nii.gz

SWU_4/sub-0025827/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025827/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/JW/MD5E-s181221--1f880b6fc8584524c094a093dfbd282e.nii.gz/MD5E-s181221--1f880b6fc8584524c094a093dfbd282e.nii.gz

SWU_4/sub-0025827/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025827/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F3/1q/MD5E-s244069--0d87d41bbe573f3396225dce08d39b57.nii.gz/MD5E-s244069--0d87d41bbe573f3396225dce08d39b57.nii.gz

SWU_4/sub-0025827/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025827/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jJ/fp/MD5E-s271840--dbe80829fe71d3b3ce2e78f6523ff2e9.nii.gz/MD5E-s271840--dbe80829fe71d3b3ce2e78f6523ff2e9.nii.gz

SWU_4/sub-0025827/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025827/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/92/MD5E-s24993--8df1a6af7e8af6539512b777a28131d5.nii.gz/MD5E-s24993--8df1a6af7e8af6539512b777a28131d5.nii.gz

SWU_4/sub-0025827/ses-2/mri/aal3_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025827/ses-2/mri/aal3_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/kJ/MD5E-s184167--52e115faa07e8fbe4b3b71f4e284ca86.nii.gz/MD5E-s184167--52e115faa07e8fbe4b3b71f4e284ca86.nii.gz

SWU_4/sub-0025827/ses-2/mri/anatomy3_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025827/ses-2/mri/anatomy3_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/wf/MD5E-s133039--b38080164cd7ca3bddb1dccf1219dba0.nii.gz/MD5E-s133039--b38080164cd7ca3bddb1dccf1219dba0.nii.gz

SWU_4/sub-0025827/ses-2/mri/anon_misub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/78/MD5E-s7767148--60ef3dace531c35bd2abd597720a1895.nii.gz/MD5E-s7767148--60ef3dace531c35bd2abd597720a1895.nii.gz

SWU_4/sub-0025827/ses-2/mri/anon_msub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/G2/MD5E-s7517706--c18c3e81ce16f45038b1cbf791a6366e.nii.gz/MD5E-s7517706--c18c3e81ce16f45038b1cbf791a6366e.nii.gz

SWU_4/sub-0025827/ses-2/mri/cat_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/Mx/MD5E-s98830--0b5841fec28e066d9a18c7a76ab2d708.nii.gz/MD5E-s98830--0b5841fec28e066d9a18c7a76ab2d708.nii.gz

SWU_4/sub-0025827/ses-2/mri/cobra_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025827/ses-2/mri/cobra_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kV/k7/MD5E-s47768--22584416258d4f1dd1b0bbf44213a981.nii.gz/MD5E-s47768--22584416258d4f1dd1b0bbf44213a981.nii.gz

SWU_4/sub-0025827/ses-2/mri/hammers_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025827/ses-2/mri/hammers_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fG/P2/MD5E-s144250--25bda8c2b6ce4a906d60c127459fb849.nii.gz/MD5E-s144250--25bda8c2b6ce4a906d60c127459fb849.nii.gz

SWU_4/sub-0025827/ses-2/mri/ibsr_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025827/ses-2/mri/ibsr_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/gp/MD5E-s153295--04a24767956e501c046f9a25e63b59ca.nii.gz/MD5E-s153295--04a24767956e501c046f9a25e63b59ca.nii.gz

SWU_4/sub-0025827/ses-2/mri/it_sub-0025827_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/3p/MD5E-s283--4afcfd0a306befe74ed3ec440b22c672.mat/MD5E-s283--4afcfd0a306befe74ed3ec440b22c672.mat

SWU_4/sub-0025827/ses-2/mri/it_sub-0025827_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/2k/MD5E-s283--87b6e8f08b8a5724c86937b003d56934.mat/MD5E-s283--87b6e8f08b8a5724c86937b003d56934.mat

SWU_4/sub-0025827/ses-2/mri/iy_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/54/MD5E-s44937058--15a4c392147725abd5b0a301335eef82.nii.gz/MD5E-s44937058--15a4c392147725abd5b0a301335eef82.nii.gz

SWU_4/sub-0025827/ses-2/mri/julichbrain_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025827/ses-2/mri/julichbrain_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/zF/MD5E-s193465--922ebe402596b8e673cc2ce89731906e.nii.gz/MD5E-s193465--922ebe402596b8e673cc2ce89731906e.nii.gz

SWU_4/sub-0025827/ses-2/mri/lpba40_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025827/ses-2/mri/lpba40_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/F0/MD5E-s141672--d0a659a4911937e1586cc5ba6871df1e.nii.gz/MD5E-s141672--d0a659a4911937e1586cc5ba6871df1e.nii.gz

SWU_4/sub-0025827/ses-2/mri/m0wp1sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/QG/MD5E-s2597752--dfcc532b14d731025fa3540c44434b11.nii.gz/MD5E-s2597752--dfcc532b14d731025fa3540c44434b11.nii.gz

SWU_4/sub-0025827/ses-2/mri/m0wp2sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zk/wX/MD5E-s2383476--a34f1dac9dd533cea6bf92ba9c116836.nii.gz/MD5E-s2383476--a34f1dac9dd533cea6bf92ba9c116836.nii.gz

SWU_4/sub-0025827/ses-2/mri/m0wp3sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/V4/MD5E-s2500713--f26a9ef8acbd8532feed483626c0859b.nii.gz/MD5E-s2500713--f26a9ef8acbd8532feed483626c0859b.nii.gz

SWU_4/sub-0025827/ses-2/mri/mori_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025827/ses-2/mri/mori_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/Z3/MD5E-s168232--1758410e761090b03deee5e148028975.nii.gz/MD5E-s168232--1758410e761090b03deee5e148028975.nii.gz

SWU_4/sub-0025827/ses-2/mri/mwp1sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/77/p4/MD5E-s2601869--1a12337a637cef188694f64426d9e981.nii.gz/MD5E-s2601869--1a12337a637cef188694f64426d9e981.nii.gz

SWU_4/sub-0025827/ses-2/mri/mwp2sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q1/M0/MD5E-s2385662--914d8235fb6e5dbcdcbfc6d1d2d35a50.nii.gz/MD5E-s2385662--914d8235fb6e5dbcdcbfc6d1d2d35a50.nii.gz

SWU_4/sub-0025827/ses-2/mri/mwp3sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/KQ/MD5E-s2497798--e01b88f1d0c885a15da68581c2c792c7.nii.gz/MD5E-s2497798--e01b88f1d0c885a15da68581c2c792c7.nii.gz

SWU_4/sub-0025827/ses-2/mri/neuromorphometrics_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025827/ses-2/mri/neuromorphometrics_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/8P/MD5E-s196496--831a7a4a4d72121f456c4408916c1e67.nii.gz/MD5E-s196496--831a7a4a4d72121f456c4408916c1e67.nii.gz

SWU_4/sub-0025827/ses-2/mri/p0sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XG/W6/MD5E-s679713--439395bf3072ac4aa41e31cc76e55c80.nii.gz/MD5E-s679713--439395bf3072ac4aa41e31cc76e55c80.nii.gz

SWU_4/sub-0025827/ses-2/mri/p1sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6m/gW/MD5E-s734737--20d767449f199f0a356dd18204f18af7.nii.gz/MD5E-s734737--20d767449f199f0a356dd18204f18af7.nii.gz

SWU_4/sub-0025827/ses-2/mri/p2sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WP/qj/MD5E-s515083--aad7e2c873f0b042ae9da1f53b5f715c.nii.gz/MD5E-s515083--aad7e2c873f0b042ae9da1f53b5f715c.nii.gz

SWU_4/sub-0025827/ses-2/mri/p3sub-0025827_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025827/ses-2/mri/rp1sub-0025827_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025827/ses-2/mri/rp2sub-0025827_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025827/ses-2/mri/rp3sub-0025827_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025827/ses-2/mri/t_sub-0025827_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/Q0/MD5E-s284--0c02537504077ccad10ea3d49bfeccbd.mat/MD5E-s284--0c02537504077ccad10ea3d49bfeccbd.mat

SWU_4/sub-0025827/ses-2/mri/t_sub-0025827_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kv/mQ/MD5E-s284--c089b8c7dbc78eac6847386042036592.mat/MD5E-s284--c089b8c7dbc78eac6847386042036592.mat

SWU_4/sub-0025827/ses-2/mri/thalamus_sub-0025827_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025827/ses-2/mri/thalamus_sub-0025827_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/qp/MD5E-s16404--be0914b52532325f40d81d4fc3c51689.nii.gz/MD5E-s16404--be0914b52532325f40d81d4fc3c51689.nii.gz

SWU_4/sub-0025827/ses-2/mri/wj_sub-0025827_ses-2_run-1_T1w.nii.gz

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