[DATALAD RUNCMD] Compute BNU_2/sub-0025962/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025962/ses-1/anat/sub-0025962_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025962/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025962/ses-1/label/catROI_sub-0025962_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/0j/MD5E-s61303--a3dd062830c7eb2eb2339409a3b09562.mat/MD5E-s61303--a3dd062830c7eb2eb2339409a3b09562.mat

BNU_2/sub-0025962/ses-1/label/catROI_sub-0025962_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3W/xz/MD5E-s188858--98d64d403d89740eca8b210ed0ab8fc5.xml/MD5E-s188858--98d64d403d89740eca8b210ed0ab8fc5.xml

BNU_2/sub-0025962/ses-1/label/catROIs_sub-0025962_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/fk/MD5E-s120155--86ddece6476a4802a9d585a5ce22b2c9.mat/MD5E-s120155--86ddece6476a4802a9d585a5ce22b2c9.mat

BNU_2/sub-0025962/ses-1/label/catROIs_sub-0025962_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/14/26/MD5E-s332099--26407b0f069e6be70671ea7ace64b8bd.xml/MD5E-s332099--26407b0f069e6be70671ea7ace64b8bd.xml

BNU_2/sub-0025962/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025962/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XX/09/MD5E-s146949--eafa09051a5a77b7c8d8408be94c69d4.nii.gz/MD5E-s146949--eafa09051a5a77b7c8d8408be94c69d4.nii.gz

BNU_2/sub-0025962/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025962/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/QK/MD5E-s163419--5a035e3a4e147dead3c623cf433ac670.nii.gz/MD5E-s163419--5a035e3a4e147dead3c623cf433ac670.nii.gz

BNU_2/sub-0025962/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025962/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/fm/MD5E-s220595--f1fee45c2568a218456ac4c851a8c855.nii.gz/MD5E-s220595--f1fee45c2568a218456ac4c851a8c855.nii.gz

BNU_2/sub-0025962/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025962/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zV/FG/MD5E-s244059--df3895017abc0a1f794c5bc2438b4330.nii.gz/MD5E-s244059--df3895017abc0a1f794c5bc2438b4330.nii.gz

BNU_2/sub-0025962/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025962/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k6/K9/MD5E-s19080--b91a00f2a38f8ebedf4e38ddafcfc769.nii.gz/MD5E-s19080--b91a00f2a38f8ebedf4e38ddafcfc769.nii.gz

BNU_2/sub-0025962/ses-1/mri/aal3_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025962/ses-1/mri/aal3_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v9/vJ/MD5E-s165894--3896f4325219572f5d19d4140bb0cd67.nii.gz/MD5E-s165894--3896f4325219572f5d19d4140bb0cd67.nii.gz

BNU_2/sub-0025962/ses-1/mri/anatomy3_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025962/ses-1/mri/anatomy3_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/vm/MD5E-s115018--1e2f33c73556294dc745711321d0677e.nii.gz/MD5E-s115018--1e2f33c73556294dc745711321d0677e.nii.gz

BNU_2/sub-0025962/ses-1/mri/anon_misub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/QP/MD5E-s4076131--4e6d7aec4f0ef37220c844d3b0635a64.nii.gz/MD5E-s4076131--4e6d7aec4f0ef37220c844d3b0635a64.nii.gz

BNU_2/sub-0025962/ses-1/mri/anon_msub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/Kw/MD5E-s7008529--a26095358ca54cc8697ee55f084488b7.nii.gz/MD5E-s7008529--a26095358ca54cc8697ee55f084488b7.nii.gz

BNU_2/sub-0025962/ses-1/mri/cat_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/7Z/MD5E-s87571--29ec04609774e3cd66cd3bd13d74fd1e.nii.gz/MD5E-s87571--29ec04609774e3cd66cd3bd13d74fd1e.nii.gz

BNU_2/sub-0025962/ses-1/mri/cobra_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025962/ses-1/mri/cobra_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ww/f8/MD5E-s39479--22b1eb35b17787d71bbb8570ce87e620.nii.gz/MD5E-s39479--22b1eb35b17787d71bbb8570ce87e620.nii.gz

BNU_2/sub-0025962/ses-1/mri/hammers_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025962/ses-1/mri/hammers_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/Gp/MD5E-s127943--bf4c4585e67d450838ee29b64b681e8c.nii.gz/MD5E-s127943--bf4c4585e67d450838ee29b64b681e8c.nii.gz

BNU_2/sub-0025962/ses-1/mri/ibsr_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025962/ses-1/mri/ibsr_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/5K/MD5E-s135396--8d0bb66cb1195240c9f9f558252c08f8.nii.gz/MD5E-s135396--8d0bb66cb1195240c9f9f558252c08f8.nii.gz

BNU_2/sub-0025962/ses-1/mri/it_sub-0025962_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/X6/MD5E-s282--32331b4bc1968c36ced080c6a131a0ff.mat/MD5E-s282--32331b4bc1968c36ced080c6a131a0ff.mat

BNU_2/sub-0025962/ses-1/mri/it_sub-0025962_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/qf/MD5E-s283--6161a98ddeb8b0f69c10774faf38e085.mat/MD5E-s283--6161a98ddeb8b0f69c10774faf38e085.mat

BNU_2/sub-0025962/ses-1/mri/iy_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/4X/MD5E-s35585829--1b63243e3f09fedd3de8cbe99e074d89.nii.gz/MD5E-s35585829--1b63243e3f09fedd3de8cbe99e074d89.nii.gz

BNU_2/sub-0025962/ses-1/mri/julichbrain_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025962/ses-1/mri/julichbrain_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pg/gm/MD5E-s172425--07b937ca8194991546b8d60dacaa7606.nii.gz/MD5E-s172425--07b937ca8194991546b8d60dacaa7606.nii.gz

BNU_2/sub-0025962/ses-1/mri/lpba40_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025962/ses-1/mri/lpba40_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/zg/MD5E-s125198--d1e5aef9c07936b01378622da864581e.nii.gz/MD5E-s125198--d1e5aef9c07936b01378622da864581e.nii.gz

BNU_2/sub-0025962/ses-1/mri/m0wp1sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/wx/MD5E-s2584456--afe273aea05bc09bc9e7424222e6aaac.nii.gz/MD5E-s2584456--afe273aea05bc09bc9e7424222e6aaac.nii.gz

BNU_2/sub-0025962/ses-1/mri/m0wp2sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Q/v5/MD5E-s2292839--7aea91238a72c269746da1f0d178f20f.nii.gz/MD5E-s2292839--7aea91238a72c269746da1f0d178f20f.nii.gz

BNU_2/sub-0025962/ses-1/mri/m0wp3sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/gM/MD5E-s2550054--4c3fc8e585dc92811c95136179411931.nii.gz/MD5E-s2550054--4c3fc8e585dc92811c95136179411931.nii.gz

BNU_2/sub-0025962/ses-1/mri/mori_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025962/ses-1/mri/mori_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/qQ/MD5E-s151738--8d6485cd48893e65563f470fe62094d0.nii.gz/MD5E-s151738--8d6485cd48893e65563f470fe62094d0.nii.gz

BNU_2/sub-0025962/ses-1/mri/mwp1sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kj/PP/MD5E-s2587457--36a13668e67b09d48d6765f835678bd9.nii.gz/MD5E-s2587457--36a13668e67b09d48d6765f835678bd9.nii.gz

BNU_2/sub-0025962/ses-1/mri/mwp2sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/fw/MD5E-s2286835--bff83b9e2fe84a913f197f747167e4f4.nii.gz/MD5E-s2286835--bff83b9e2fe84a913f197f747167e4f4.nii.gz

BNU_2/sub-0025962/ses-1/mri/mwp3sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/Kx/MD5E-s2547613--a58a436822cf17a67b3de5e7a70cc28b.nii.gz/MD5E-s2547613--a58a436822cf17a67b3de5e7a70cc28b.nii.gz

BNU_2/sub-0025962/ses-1/mri/neuromorphometrics_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025962/ses-1/mri/neuromorphometrics_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025962/ses-1/mri/p0sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5p/XZ/MD5E-s763132--d3764bfec718bd5b2029abd215787d3b.nii.gz/MD5E-s763132--d3764bfec718bd5b2029abd215787d3b.nii.gz

BNU_2/sub-0025962/ses-1/mri/p1sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M3/7g/MD5E-s770385--33123f93da845d5473f3af7ab3edce0f.nii.gz/MD5E-s770385--33123f93da845d5473f3af7ab3edce0f.nii.gz

BNU_2/sub-0025962/ses-1/mri/p2sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/36/MD5E-s521457--a155fa48792df3b64dd40339cd32a8fc.nii.gz/MD5E-s521457--a155fa48792df3b64dd40339cd32a8fc.nii.gz

BNU_2/sub-0025962/ses-1/mri/p3sub-0025962_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025962/ses-1/mri/rp1sub-0025962_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025962/ses-1/mri/rp2sub-0025962_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025962/ses-1/mri/rp3sub-0025962_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025962/ses-1/mri/t_sub-0025962_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025962/ses-1/mri/t_sub-0025962_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/7v/MD5E-s284--e72f3ad05d342d38d7ff3d9fbe986578.mat/MD5E-s284--e72f3ad05d342d38d7ff3d9fbe986578.mat

BNU_2/sub-0025962/ses-1/mri/thalamus_sub-0025962_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025962/ses-1/mri/thalamus_sub-0025962_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/KQ/MD5E-s12426--40614eb2b3eaa4c63d1a9d3b578c699f.nii.gz/MD5E-s12426--40614eb2b3eaa4c63d1a9d3b578c699f.nii.gz

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