[DATALAD RUNCMD] Compute SWU_4/sub-0025640/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025640/ses-1/anat/sub-0025640_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025640/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025640/ses-1/label/catROI_sub-0025640_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/vX/MD5E-s61283--0d5bdd0a33230c9bfd33bffe082984c3.mat/MD5E-s61283--0d5bdd0a33230c9bfd33bffe082984c3.mat

SWU_4/sub-0025640/ses-1/label/catROI_sub-0025640_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/Pq/MD5E-s189248--4373f73cc2c8b0906281e21f478c97e6.xml/MD5E-s189248--4373f73cc2c8b0906281e21f478c97e6.xml

SWU_4/sub-0025640/ses-1/label/catROIs_sub-0025640_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wz/KW/MD5E-s120059--84e6a59f8c4842b852654cc2df196f3a.mat/MD5E-s120059--84e6a59f8c4842b852654cc2df196f3a.mat

SWU_4/sub-0025640/ses-1/label/catROIs_sub-0025640_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/90/MD5E-s332096--55f5b1a9eac3e64d5f92997bc0914836.xml/MD5E-s332096--55f5b1a9eac3e64d5f92997bc0914836.xml

SWU_4/sub-0025640/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025640/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/55/kk/MD5E-s149063--85bb5ef8563c7e5f0db5579823aa1fa1.nii.gz/MD5E-s149063--85bb5ef8563c7e5f0db5579823aa1fa1.nii.gz

SWU_4/sub-0025640/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025640/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WZ/w8/MD5E-s168742--470a53114cdefcb9c9cf62e461d414fe.nii.gz/MD5E-s168742--470a53114cdefcb9c9cf62e461d414fe.nii.gz

SWU_4/sub-0025640/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025640/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/19/xW/MD5E-s226083--bfe79a41c1adc70f9b783b49d8f3a953.nii.gz/MD5E-s226083--bfe79a41c1adc70f9b783b49d8f3a953.nii.gz

SWU_4/sub-0025640/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025640/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/14/zf/MD5E-s251997--b23684d959b7b4d84860eea2d41624c5.nii.gz/MD5E-s251997--b23684d959b7b4d84860eea2d41624c5.nii.gz

SWU_4/sub-0025640/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025640/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/PX/MD5E-s24040--590272815b6d501ab81054dc00ee95d6.nii.gz/MD5E-s24040--590272815b6d501ab81054dc00ee95d6.nii.gz

SWU_4/sub-0025640/ses-1/mri/aal3_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025640/ses-1/mri/aal3_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gq/WP/MD5E-s172099--ea9bcb67db1b3cb17ea83f69bc3f65b5.nii.gz/MD5E-s172099--ea9bcb67db1b3cb17ea83f69bc3f65b5.nii.gz

SWU_4/sub-0025640/ses-1/mri/anatomy3_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025640/ses-1/mri/anatomy3_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/Kw/MD5E-s122612--150918a211cd96be5b5f9102e5ff8160.nii.gz/MD5E-s122612--150918a211cd96be5b5f9102e5ff8160.nii.gz

SWU_4/sub-0025640/ses-1/mri/anon_misub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/ZW/MD5E-s8072555--59c96248983a494cce5ceb663d35ad38.nii.gz/MD5E-s8072555--59c96248983a494cce5ceb663d35ad38.nii.gz

SWU_4/sub-0025640/ses-1/mri/anon_msub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/8w/MD5E-s7453250--9ed8fa3dab3aeeacd3a903515cab5509.nii.gz/MD5E-s7453250--9ed8fa3dab3aeeacd3a903515cab5509.nii.gz

SWU_4/sub-0025640/ses-1/mri/cat_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/5p/MD5E-s92917--e5f71fcd994fd4eef174d676358f842c.nii.gz/MD5E-s92917--e5f71fcd994fd4eef174d676358f842c.nii.gz

SWU_4/sub-0025640/ses-1/mri/cobra_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025640/ses-1/mri/cobra_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/7x/MD5E-s46019--88b5d3a8f5afbf208ad574c03669335c.nii.gz/MD5E-s46019--88b5d3a8f5afbf208ad574c03669335c.nii.gz

SWU_4/sub-0025640/ses-1/mri/hammers_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025640/ses-1/mri/hammers_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fg/pp/MD5E-s134864--962ad438c1b47bc32dbe040c7f4af51b.nii.gz/MD5E-s134864--962ad438c1b47bc32dbe040c7f4af51b.nii.gz

SWU_4/sub-0025640/ses-1/mri/ibsr_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025640/ses-1/mri/ibsr_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/Xm/MD5E-s142300--56168cc049eb44d35b860df3cc159e91.nii.gz/MD5E-s142300--56168cc049eb44d35b860df3cc159e91.nii.gz

SWU_4/sub-0025640/ses-1/mri/it_sub-0025640_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/3P/MD5E-s283--ac4bf47a4b37cdb5a20a88151d6e2dd3.mat/MD5E-s283--ac4bf47a4b37cdb5a20a88151d6e2dd3.mat

SWU_4/sub-0025640/ses-1/mri/it_sub-0025640_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/mp/MD5E-s283--5348af3ab842b0f29513fb6755992401.mat/MD5E-s283--5348af3ab842b0f29513fb6755992401.mat

SWU_4/sub-0025640/ses-1/mri/iy_sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/m5/MD5E-s40316446--95029647fe289332ba242229ddda7b0d.nii.gz/MD5E-s40316446--95029647fe289332ba242229ddda7b0d.nii.gz

SWU_4/sub-0025640/ses-1/mri/julichbrain_sub-0025640_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025640/ses-1/mri/julichbrain_sub-0025640_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025640/ses-1/mri/lpba40_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025640/ses-1/mri/lpba40_sub-0025640_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025640/ses-1/mri/m0wp1sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fM/z5/MD5E-s2592793--101622061f2cc78158e2a426600b06f0.nii.gz/MD5E-s2592793--101622061f2cc78158e2a426600b06f0.nii.gz

SWU_4/sub-0025640/ses-1/mri/m0wp2sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/jM/MD5E-s2337958--439f65e9ce62ce0b95b96aeea0131e67.nii.gz/MD5E-s2337958--439f65e9ce62ce0b95b96aeea0131e67.nii.gz

SWU_4/sub-0025640/ses-1/mri/m0wp3sub-0025640_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Mq/z6/MD5E-s2559399--b809290cfb54c93c21206d8232992452.nii.gz/MD5E-s2559399--b809290cfb54c93c21206d8232992452.nii.gz

SWU_4/sub-0025640/ses-1/mri/mori_sub-0025640_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025640/ses-1/mri/mori_sub-0025640_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/25/Kf/MD5E-s156858--140d83c4a9c347c0dc5b0b86db084625.nii.gz/MD5E-s156858--140d83c4a9c347c0dc5b0b86db084625.nii.gz

SWU_4/sub-0025640/ses-1/mri/mwp1sub-0025640_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025640/ses-1/mri/mwp2sub-0025640_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Mz/FM/MD5E-s2343991--91b7c01aa95ea2e5ba748e1023a04102.nii.gz/MD5E-s2343991--91b7c01aa95ea2e5ba748e1023a04102.nii.gz

SWU_4/sub-0025640/ses-1/mri/mwp3sub-0025640_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025640/ses-1/mri/neuromorphometrics_sub-0025640_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025640/ses-1/mri/neuromorphometrics_sub-0025640_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025640/ses-1/mri/p0sub-0025640_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/5g/MD5E-s587925--680c5ebab083d7af42f8f13b1cd2c8cb.nii.gz/MD5E-s587925--680c5ebab083d7af42f8f13b1cd2c8cb.nii.gz

SWU_4/sub-0025640/ses-1/mri/p1sub-0025640_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025640/ses-1/mri/p2sub-0025640_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025640/ses-1/mri/p3sub-0025640_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025640/ses-1/mri/rp1sub-0025640_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025640/ses-1/mri/rp2sub-0025640_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025640/ses-1/mri/rp3sub-0025640_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025640/ses-1/mri/t_sub-0025640_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025640/ses-1/mri/t_sub-0025640_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025640/ses-1/mri/thalamus_sub-0025640_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025640/ses-1/mri/thalamus_sub-0025640_ses-1_run-1_T1w.nii.gz

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