[DATALAD RUNCMD] Compute SWU_4/sub-0025699/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025699/ses-1/anat/sub-0025699_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025699/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025699/ses-1/label/catROI_sub-0025699_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4J/vv/MD5E-s61244--9892de8dc5ec4bc2e2cada4212529309.mat/MD5E-s61244--9892de8dc5ec4bc2e2cada4212529309.mat

SWU_4/sub-0025699/ses-1/label/catROI_sub-0025699_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1w/07/MD5E-s188695--b7e0b7c715f185c4ac948a7f74b35d43.xml/MD5E-s188695--b7e0b7c715f185c4ac948a7f74b35d43.xml

SWU_4/sub-0025699/ses-1/label/catROIs_sub-0025699_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/vK/MD5E-s120119--574f8293c612ecbc3a3c4b02c100edea.mat/MD5E-s120119--574f8293c612ecbc3a3c4b02c100edea.mat

SWU_4/sub-0025699/ses-1/label/catROIs_sub-0025699_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/ZZ/MD5E-s332160--bd4d013ec838a02bc21fbd7ad20b5177.xml/MD5E-s332160--bd4d013ec838a02bc21fbd7ad20b5177.xml

SWU_4/sub-0025699/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025699/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/qm/MD5E-s168293--f35e36f708326480cfc9e70bda559b32.nii.gz/MD5E-s168293--f35e36f708326480cfc9e70bda559b32.nii.gz

SWU_4/sub-0025699/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025699/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/Jv/MD5E-s187856--b0314de14a477a1fc6b92d2d4df91eec.nii.gz/MD5E-s187856--b0314de14a477a1fc6b92d2d4df91eec.nii.gz

SWU_4/sub-0025699/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025699/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/4V/MD5E-s253827--994388e7a1234fef8171f07f135b981a.nii.gz/MD5E-s253827--994388e7a1234fef8171f07f135b981a.nii.gz

SWU_4/sub-0025699/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025699/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/k2/MD5E-s281847--b8576c092adb53df2767296334e6263b.nii.gz/MD5E-s281847--b8576c092adb53df2767296334e6263b.nii.gz

SWU_4/sub-0025699/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025699/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/5Q/MD5E-s24904--ddad5a81d176aa5d10eede252d9d0bdc.nii.gz/MD5E-s24904--ddad5a81d176aa5d10eede252d9d0bdc.nii.gz

SWU_4/sub-0025699/ses-1/mri/aal3_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025699/ses-1/mri/aal3_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/2z/MD5E-s187129--49a5c69ec060338faa1d4e00179d076a.nii.gz/MD5E-s187129--49a5c69ec060338faa1d4e00179d076a.nii.gz

SWU_4/sub-0025699/ses-1/mri/anatomy3_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025699/ses-1/mri/anatomy3_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qm/Mp/MD5E-s137262--aefa39dacf3e7145caae4d353b544a75.nii.gz/MD5E-s137262--aefa39dacf3e7145caae4d353b544a75.nii.gz

SWU_4/sub-0025699/ses-1/mri/anon_misub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/zv/MD5E-s10978010--090fac6db07e6bbe8a948301937066ab.nii.gz/MD5E-s10978010--090fac6db07e6bbe8a948301937066ab.nii.gz

SWU_4/sub-0025699/ses-1/mri/anon_msub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/GQ/MD5E-s10603625--e43a14422314b836a89fdafb9a34f43d.nii.gz/MD5E-s10603625--e43a14422314b836a89fdafb9a34f43d.nii.gz

SWU_4/sub-0025699/ses-1/mri/cat_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zG/4Z/MD5E-s101904--704d7cd099b659ea4f146142927f31ac.nii.gz/MD5E-s101904--704d7cd099b659ea4f146142927f31ac.nii.gz

SWU_4/sub-0025699/ses-1/mri/cobra_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025699/ses-1/mri/cobra_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/F6/MD5E-s48283--410ae3c27ac68ed423cb24a3054a2c66.nii.gz/MD5E-s48283--410ae3c27ac68ed423cb24a3054a2c66.nii.gz

SWU_4/sub-0025699/ses-1/mri/hammers_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025699/ses-1/mri/hammers_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g9/K8/MD5E-s148590--285aee6df0fee167005333e75021d979.nii.gz/MD5E-s148590--285aee6df0fee167005333e75021d979.nii.gz

SWU_4/sub-0025699/ses-1/mri/ibsr_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025699/ses-1/mri/ibsr_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gx/Vm/MD5E-s156588--217cec95dca934615821238348d7e9ec.nii.gz/MD5E-s156588--217cec95dca934615821238348d7e9ec.nii.gz

SWU_4/sub-0025699/ses-1/mri/it_sub-0025699_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/m0/MD5E-s283--0106399f5d668b9bcc97166d1ecbbd3f.mat/MD5E-s283--0106399f5d668b9bcc97166d1ecbbd3f.mat

SWU_4/sub-0025699/ses-1/mri/it_sub-0025699_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/Wf/MD5E-s283--37171ed2338428c9fb9ca2f2c3189e89.mat/MD5E-s283--37171ed2338428c9fb9ca2f2c3189e89.mat

SWU_4/sub-0025699/ses-1/mri/iy_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xf/Qm/MD5E-s47225541--4ab2d0bba3a02f071d2c9bd5f6045c70.nii.gz/MD5E-s47225541--4ab2d0bba3a02f071d2c9bd5f6045c70.nii.gz

SWU_4/sub-0025699/ses-1/mri/julichbrain_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025699/ses-1/mri/julichbrain_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8M/16/MD5E-s201197--733e25428a14c70efa182bdb5505168e.nii.gz/MD5E-s201197--733e25428a14c70efa182bdb5505168e.nii.gz

SWU_4/sub-0025699/ses-1/mri/lpba40_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025699/ses-1/mri/lpba40_sub-0025699_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Fk/WP/MD5E-s145467--b21c5652aabe929e9475b0d3b9e3f4b9.nii.gz/MD5E-s145467--b21c5652aabe929e9475b0d3b9e3f4b9.nii.gz

SWU_4/sub-0025699/ses-1/mri/m0wp1sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/Kv/MD5E-s2578537--195c3f76b090eca666e4b38b991b17cd.nii.gz/MD5E-s2578537--195c3f76b090eca666e4b38b991b17cd.nii.gz

SWU_4/sub-0025699/ses-1/mri/m0wp2sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/kp/MD5E-s2329178--eb570f4a68d752ecab801823024c3e3d.nii.gz/MD5E-s2329178--eb570f4a68d752ecab801823024c3e3d.nii.gz

SWU_4/sub-0025699/ses-1/mri/m0wp3sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gv/JG/MD5E-s2522378--be59c900d111e31d875953f944d1ecfd.nii.gz/MD5E-s2522378--be59c900d111e31d875953f944d1ecfd.nii.gz

SWU_4/sub-0025699/ses-1/mri/mori_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025699/ses-1/mri/mori_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/Xz/MD5E-s174082--42022577976704da35f1cecd381b9ca4.nii.gz/MD5E-s174082--42022577976704da35f1cecd381b9ca4.nii.gz

SWU_4/sub-0025699/ses-1/mri/mwp1sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/kw/MD5E-s2580785--f80b3856a11a787dd8adc4d3096e6190.nii.gz/MD5E-s2580785--f80b3856a11a787dd8adc4d3096e6190.nii.gz

SWU_4/sub-0025699/ses-1/mri/mwp2sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/90/MD5E-s2323857--8f964ee3fb1ee250d9b2de8f9f361a12.nii.gz/MD5E-s2323857--8f964ee3fb1ee250d9b2de8f9f361a12.nii.gz

SWU_4/sub-0025699/ses-1/mri/mwp3sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/9Z/MD5E-s2519238--83423fa62874bf4f5d0c735bea91c38d.nii.gz/MD5E-s2519238--83423fa62874bf4f5d0c735bea91c38d.nii.gz

SWU_4/sub-0025699/ses-1/mri/neuromorphometrics_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025699/ses-1/mri/neuromorphometrics_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/2P/MD5E-s202527--f2f3f6491968c785f87b6f5c82c3d09e.nii.gz/MD5E-s202527--f2f3f6491968c785f87b6f5c82c3d09e.nii.gz

SWU_4/sub-0025699/ses-1/mri/p0sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/MF/MD5E-s653408--2a66f432d0f88757491ec1d24067ffe6.nii.gz/MD5E-s653408--2a66f432d0f88757491ec1d24067ffe6.nii.gz

SWU_4/sub-0025699/ses-1/mri/p1sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025699/ses-1/mri/p2sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/Gv/MD5E-s460142--7f13948d7f2b6f3a048aced9b3b80244.nii.gz/MD5E-s460142--7f13948d7f2b6f3a048aced9b3b80244.nii.gz

SWU_4/sub-0025699/ses-1/mri/p3sub-0025699_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025699/ses-1/mri/rp1sub-0025699_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025699/ses-1/mri/rp2sub-0025699_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025699/ses-1/mri/rp3sub-0025699_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025699/ses-1/mri/t_sub-0025699_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025699/ses-1/mri/t_sub-0025699_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/36/1k/MD5E-s284--c8d2e5dd3c8cb85a606c25b3c6d5365f.mat/MD5E-s284--c8d2e5dd3c8cb85a606c25b3c6d5365f.mat

SWU_4/sub-0025699/ses-1/mri/thalamus_sub-0025699_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025699/ses-1/mri/thalamus_sub-0025699_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025699/ses-1/mri/wj_sub-0025699_ses-1_run-1_T1w.nii.gz

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