[DATALAD RUNCMD] Compute SWU_4/sub-0025739/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025739/ses-1/anat/sub-0025739_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025739/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025739/ses-1/label/catROI_sub-0025739_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/1Q/MD5E-s58492--612af614f2eb73073fe2f14fbd46c375.mat/MD5E-s58492--612af614f2eb73073fe2f14fbd46c375.mat

SWU_4/sub-0025739/ses-1/label/catROI_sub-0025739_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/vZ/MD5E-s189039--8999e43389450fa5640b145fcccd4ba6.xml/MD5E-s189039--8999e43389450fa5640b145fcccd4ba6.xml

SWU_4/sub-0025739/ses-1/label/catROIs_sub-0025739_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/Q5/MD5E-s120088--98c52e62f462c3a4e936b03e65e2fe08.mat/MD5E-s120088--98c52e62f462c3a4e936b03e65e2fe08.mat

SWU_4/sub-0025739/ses-1/label/catROIs_sub-0025739_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WZ/Xj/MD5E-s332175--7bb2047597dd0b4380fb4efc4b035a96.xml/MD5E-s332175--7bb2047597dd0b4380fb4efc4b035a96.xml

SWU_4/sub-0025739/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025739/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/7v/MD5E-s160660--3b8bf5c03a02c1f070439920e246b91c.nii.gz/MD5E-s160660--3b8bf5c03a02c1f070439920e246b91c.nii.gz

SWU_4/sub-0025739/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025739/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/3J/MD5E-s178677--0e8ec74103f7ccc70aa09251a717c2fa.nii.gz/MD5E-s178677--0e8ec74103f7ccc70aa09251a717c2fa.nii.gz

SWU_4/sub-0025739/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025739/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vJ/kP/MD5E-s243635--2ba64bac94f9eb802b1c19f6fbf5284d.nii.gz/MD5E-s243635--2ba64bac94f9eb802b1c19f6fbf5284d.nii.gz

SWU_4/sub-0025739/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025739/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/z9/MD5E-s269271--9506b35e2556accfda5580c5773ca10c.nii.gz/MD5E-s269271--9506b35e2556accfda5580c5773ca10c.nii.gz

SWU_4/sub-0025739/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025739/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/VJ/MD5E-s24213--cfe440eebb9eae51276847fb8ae5c6a1.nii.gz/MD5E-s24213--cfe440eebb9eae51276847fb8ae5c6a1.nii.gz

SWU_4/sub-0025739/ses-1/mri/aal3_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025739/ses-1/mri/aal3_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kk/P8/MD5E-s180324--11c36e4499ddff2fbfd437527d94ea23.nii.gz/MD5E-s180324--11c36e4499ddff2fbfd437527d94ea23.nii.gz

SWU_4/sub-0025739/ses-1/mri/anatomy3_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025739/ses-1/mri/anatomy3_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1f/fK/MD5E-s133304--1addd56db93bb5f39940b9672791b455.nii.gz/MD5E-s133304--1addd56db93bb5f39940b9672791b455.nii.gz

SWU_4/sub-0025739/ses-1/mri/anon_misub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/zz/MD5E-s10607002--50e38672bdc31d089cb4572e27573e76.nii.gz/MD5E-s10607002--50e38672bdc31d089cb4572e27573e76.nii.gz

SWU_4/sub-0025739/ses-1/mri/anon_msub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/pJ/MD5E-s11594753--2bbd19a89bd03ec7d529211cfec02615.nii.gz/MD5E-s11594753--2bbd19a89bd03ec7d529211cfec02615.nii.gz

SWU_4/sub-0025739/ses-1/mri/cat_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/Jq/MD5E-s98579--cfadd6efeab2ec9cc9672b386489d04e.nii.gz/MD5E-s98579--cfadd6efeab2ec9cc9672b386489d04e.nii.gz

SWU_4/sub-0025739/ses-1/mri/cobra_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025739/ses-1/mri/cobra_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0G/4j/MD5E-s48924--cf6e48513dcee0e9dba7eea8a48a411b.nii.gz/MD5E-s48924--cf6e48513dcee0e9dba7eea8a48a411b.nii.gz

SWU_4/sub-0025739/ses-1/mri/hammers_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025739/ses-1/mri/hammers_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/g1/MD5E-s144589--fe117ff66d2ae3109dae6b5831882693.nii.gz/MD5E-s144589--fe117ff66d2ae3109dae6b5831882693.nii.gz

SWU_4/sub-0025739/ses-1/mri/ibsr_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025739/ses-1/mri/ibsr_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/6m/MD5E-s152019--f649642c39ff49ebef96c20c446f8309.nii.gz/MD5E-s152019--f649642c39ff49ebef96c20c446f8309.nii.gz

SWU_4/sub-0025739/ses-1/mri/it_sub-0025739_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/mQ/MD5E-s284--2b79f69398b8c8877bd332b79c2511c2.mat/MD5E-s284--2b79f69398b8c8877bd332b79c2511c2.mat

SWU_4/sub-0025739/ses-1/mri/it_sub-0025739_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/5w/MD5E-s283--7e338924d4133dedb12ef7d2a8f1be7e.mat/MD5E-s283--7e338924d4133dedb12ef7d2a8f1be7e.mat

SWU_4/sub-0025739/ses-1/mri/iy_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/VW/MD5E-s42423465--ee485f40cb4c83f412ec4dc750a210de.nii.gz/MD5E-s42423465--ee485f40cb4c83f412ec4dc750a210de.nii.gz

SWU_4/sub-0025739/ses-1/mri/julichbrain_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025739/ses-1/mri/julichbrain_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/JV/MD5E-s194387--9c61e151da8c1e9db8a17d39c48bb386.nii.gz/MD5E-s194387--9c61e151da8c1e9db8a17d39c48bb386.nii.gz

SWU_4/sub-0025739/ses-1/mri/lpba40_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025739/ses-1/mri/lpba40_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/f8/MD5E-s141351--4e242668dae3fd0b715600214df08f1e.nii.gz/MD5E-s141351--4e242668dae3fd0b715600214df08f1e.nii.gz

SWU_4/sub-0025739/ses-1/mri/m0wp1sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6q/4w/MD5E-s2581644--5b0f32cb83ed4b51df4f1ac04207cdac.nii.gz/MD5E-s2581644--5b0f32cb83ed4b51df4f1ac04207cdac.nii.gz

SWU_4/sub-0025739/ses-1/mri/m0wp2sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/24/MD5E-s2302486--d60abc46a56589b6c8214c121581824f.nii.gz/MD5E-s2302486--d60abc46a56589b6c8214c121581824f.nii.gz

SWU_4/sub-0025739/ses-1/mri/m0wp3sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zj/k8/MD5E-s2578324--8659cfe987baf3874bdf1918f35e06d4.nii.gz/MD5E-s2578324--8659cfe987baf3874bdf1918f35e06d4.nii.gz

SWU_4/sub-0025739/ses-1/mri/mori_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025739/ses-1/mri/mori_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/88/Xk/MD5E-s169272--fc75aa8cf9ed30833df72efd63185117.nii.gz/MD5E-s169272--fc75aa8cf9ed30833df72efd63185117.nii.gz

SWU_4/sub-0025739/ses-1/mri/mwp1sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kQ/5v/MD5E-s2593012--e36f36ad6a7d2eaf5815da071bd66da5.nii.gz/MD5E-s2593012--e36f36ad6a7d2eaf5815da071bd66da5.nii.gz

SWU_4/sub-0025739/ses-1/mri/mwp2sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/WQ/MD5E-s2307074--901b54cbf9987a4ea4ef6e68fb42bc3c.nii.gz/MD5E-s2307074--901b54cbf9987a4ea4ef6e68fb42bc3c.nii.gz

SWU_4/sub-0025739/ses-1/mri/mwp3sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025739/ses-1/mri/neuromorphometrics_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025739/ses-1/mri/neuromorphometrics_sub-0025739_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025739/ses-1/mri/p0sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f5/70/MD5E-s630064--69479af4860b119a463e15a2dd1deb82.nii.gz/MD5E-s630064--69479af4860b119a463e15a2dd1deb82.nii.gz

SWU_4/sub-0025739/ses-1/mri/p1sub-0025739_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025739/ses-1/mri/p2sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/kV/MD5E-s433449--3e0571c2dd828e01cd99e120c7a2ffd9.nii.gz/MD5E-s433449--3e0571c2dd828e01cd99e120c7a2ffd9.nii.gz

SWU_4/sub-0025739/ses-1/mri/p3sub-0025739_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025739/ses-1/mri/rp1sub-0025739_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025739/ses-1/mri/rp2sub-0025739_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025739/ses-1/mri/rp3sub-0025739_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025739/ses-1/mri/t_sub-0025739_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gF/qq/MD5E-s284--fa7148c8cb320c6b48eac6291a83a6e0.mat/MD5E-s284--fa7148c8cb320c6b48eac6291a83a6e0.mat

SWU_4/sub-0025739/ses-1/mri/t_sub-0025739_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/Gk/MD5E-s282--cc1f7a9a617d402d755d66f87cb6f34c.mat/MD5E-s282--cc1f7a9a617d402d755d66f87cb6f34c.mat

SWU_4/sub-0025739/ses-1/mri/thalamus_sub-0025739_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025739/ses-1/mri/thalamus_sub-0025739_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025739/ses-1/mri/wj_sub-0025739_ses-1_run-1_T1w.nii.gz

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