[DATALAD RUNCMD] Compute NYU_2/sub-0025156/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025156/ses-1/anat/sub-0025156_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025156/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025156/ses-1/label/catROI_sub-0025156_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/XX/MD5E-s57641--3e52445adaf38a69fd74f763a4bce2e8.mat/MD5E-s57641--3e52445adaf38a69fd74f763a4bce2e8.mat

NYU_2/sub-0025156/ses-1/label/catROI_sub-0025156_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P5/qq/MD5E-s188974--c71e6253de14abc2588266a517214518.xml/MD5E-s188974--c71e6253de14abc2588266a517214518.xml

NYU_2/sub-0025156/ses-1/label/catROI_sub-0025156_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vq/qM/MD5E-s57700--08b16988c437c276423e6aee2b71b540.mat/MD5E-s57700--08b16988c437c276423e6aee2b71b540.mat

NYU_2/sub-0025156/ses-1/label/catROI_sub-0025156_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Qk/2W/MD5E-s189103--a91975b3c56075555e2396e166f38e54.xml/MD5E-s189103--a91975b3c56075555e2396e166f38e54.xml

NYU_2/sub-0025156/ses-1/label/catROIs_sub-0025156_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/mW/MD5E-s120248--20db13dbfe194322bb1bf56c331e0772.mat/MD5E-s120248--20db13dbfe194322bb1bf56c331e0772.mat

NYU_2/sub-0025156/ses-1/label/catROIs_sub-0025156_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2z/FP/MD5E-s332167--8e8b060b274288b803a5eb33faccebcf.xml/MD5E-s332167--8e8b060b274288b803a5eb33faccebcf.xml

NYU_2/sub-0025156/ses-1/label/catROIs_sub-0025156_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Pv/5X/MD5E-s120142--707ec46fa984c65bb2129a93f288532e.mat/MD5E-s120142--707ec46fa984c65bb2129a93f288532e.mat

NYU_2/sub-0025156/ses-1/label/catROIs_sub-0025156_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jG/k9/MD5E-s332084--ca704e87b6316c45be4a62298ef12440.xml/MD5E-s332084--ca704e87b6316c45be4a62298ef12440.xml

NYU_2/sub-0025156/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025156_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/Gz/MD5E-s128258--1c4efe659d4d83b8c2807218c164c764.nii.gz/MD5E-s128258--1c4efe659d4d83b8c2807218c164c764.nii.gz

NYU_2/sub-0025156/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1q/9V/MD5E-s128602--0dd05a3dfd64644d40c044940e90c394.nii.gz/MD5E-s128602--0dd05a3dfd64644d40c044940e90c394.nii.gz

NYU_2/sub-0025156/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025156_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XX/FG/MD5E-s145341--97843f096487e643e183b82d93ddaa0e.nii.gz/MD5E-s145341--97843f096487e643e183b82d93ddaa0e.nii.gz

NYU_2/sub-0025156/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/q2/0q/MD5E-s145979--6555266e480403cd2146c1b91b2fed91.nii.gz/MD5E-s145979--6555266e480403cd2146c1b91b2fed91.nii.gz

NYU_2/sub-0025156/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025156_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/zP/MD5E-s193741--de8740efefb9fff6acbc3b91a8ca04fe.nii.gz/MD5E-s193741--de8740efefb9fff6acbc3b91a8ca04fe.nii.gz

NYU_2/sub-0025156/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jx/5K/MD5E-s194072--390e88147b3ab65e9c33495733d95a83.nii.gz/MD5E-s194072--390e88147b3ab65e9c33495733d95a83.nii.gz

NYU_2/sub-0025156/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025156_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kK/Xz/MD5E-s215884--cc148ab09aa244247a2f98c18992be29.nii.gz/MD5E-s215884--cc148ab09aa244247a2f98c18992be29.nii.gz

NYU_2/sub-0025156/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/ZV/M4/MD5E-s216536--93b33ecefc6634744e1f37ea22a2dcfd.nii.gz/MD5E-s216536--93b33ecefc6634744e1f37ea22a2dcfd.nii.gz

NYU_2/sub-0025156/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025156_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/kV/MD5E-s18757--d09026a62d981f72e7fd5f43529cfcb0.nii.gz/MD5E-s18757--d09026a62d981f72e7fd5f43529cfcb0.nii.gz

NYU_2/sub-0025156/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/35/9Z/MD5E-s18886--3cbfb7d77ccbfd198a24a11749ebf73b.nii.gz/MD5E-s18886--3cbfb7d77ccbfd198a24a11749ebf73b.nii.gz

NYU_2/sub-0025156/ses-1/mri/aal3_sub-0025156_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3W/gq/MD5E-s149708--21943ba4bce7cf204a9afb304c9ce42f.nii.gz/MD5E-s149708--21943ba4bce7cf204a9afb304c9ce42f.nii.gz

NYU_2/sub-0025156/ses-1/mri/aal3_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2k/7j/MD5E-s149877--88866987e1e858c8652eba86d5f9d6f7.nii.gz/MD5E-s149877--88866987e1e858c8652eba86d5f9d6f7.nii.gz

NYU_2/sub-0025156/ses-1/mri/anatomy3_sub-0025156_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/95/MD5E-s103697--10fb363c2eef0610e099d1634cb75cda.nii.gz/MD5E-s103697--10fb363c2eef0610e099d1634cb75cda.nii.gz

NYU_2/sub-0025156/ses-1/mri/anatomy3_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/X3/0Z/MD5E-s103593--09438f2e59f197b1e39394a242f55b87.nii.gz/MD5E-s103593--09438f2e59f197b1e39394a242f55b87.nii.gz

NYU_2/sub-0025156/ses-1/mri/anon_misub-0025156_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/P2/WG/MD5E-s3570749--748aa6f11d0974194aff5b99f1803874.nii.gz/MD5E-s3570749--748aa6f11d0974194aff5b99f1803874.nii.gz

NYU_2/sub-0025156/ses-1/mri/anon_misub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/XJ/30/MD5E-s3611939--69c839464d624e3dcee55b46dee48802.nii.gz/MD5E-s3611939--69c839464d624e3dcee55b46dee48802.nii.gz

NYU_2/sub-0025156/ses-1/mri/anon_msub-0025156_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/xM/gF/MD5E-s7003929--41cc37d445544787c893616ef54a0c1b.nii.gz/MD5E-s7003929--41cc37d445544787c893616ef54a0c1b.nii.gz

NYU_2/sub-0025156/ses-1/mri/anon_msub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/m5/GP/MD5E-s9203830--b2ed0e7e1b3b4197d8e90d1bd6f9b682.nii.gz/MD5E-s9203830--b2ed0e7e1b3b4197d8e90d1bd6f9b682.nii.gz

NYU_2/sub-0025156/ses-1/mri/cat_sub-0025156_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/k4/MD5E-s78627--5b47dd6eba0cccbb56f6952d751b4cd1.nii.gz/MD5E-s78627--5b47dd6eba0cccbb56f6952d751b4cd1.nii.gz

NYU_2/sub-0025156/ses-1/mri/cat_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QV/Gv/MD5E-s78747--31d46a78098d336486875856f905fb02.nii.gz/MD5E-s78747--31d46a78098d336486875856f905fb02.nii.gz

NYU_2/sub-0025156/ses-1/mri/cobra_sub-0025156_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/J8/gJ/MD5E-s37837--c7987ca1ab89e9a12f5fe80ac3313acf.nii.gz/MD5E-s37837--c7987ca1ab89e9a12f5fe80ac3313acf.nii.gz

NYU_2/sub-0025156/ses-1/mri/cobra_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5V/pX/MD5E-s37972--15a2d60973ba81e7bc2d770bab70c6ff.nii.gz/MD5E-s37972--15a2d60973ba81e7bc2d770bab70c6ff.nii.gz

NYU_2/sub-0025156/ses-1/mri/hammers_sub-0025156_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/qj/Wp/MD5E-s113691--cb5da8f814167f04abc1811801b01cd2.nii.gz/MD5E-s113691--cb5da8f814167f04abc1811801b01cd2.nii.gz

NYU_2/sub-0025156/ses-1/mri/hammers_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025156/ses-1/mri/ibsr_sub-0025156_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/w5/JV/MD5E-s119626--d14b8179b418f9dd11d5626369d4fce1.nii.gz/MD5E-s119626--d14b8179b418f9dd11d5626369d4fce1.nii.gz

NYU_2/sub-0025156/ses-1/mri/ibsr_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025156/ses-1/mri/it_sub-0025156_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/52/Q3/MD5E-s282--83f41eab31029f3ff15924ddf556b10f.mat/MD5E-s282--83f41eab31029f3ff15924ddf556b10f.mat

NYU_2/sub-0025156/ses-1/mri/it_sub-0025156_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/xq/MD5E-s282--712703523f233465f7208afcf6890e86.mat/MD5E-s282--712703523f233465f7208afcf6890e86.mat

NYU_2/sub-0025156/ses-1/mri/it_sub-0025156_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025156/ses-1/mri/it_sub-0025156_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025156/ses-1/mri/iy_sub-0025156_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/iy_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025156/ses-1/mri/julichbrain_sub-0025156_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/julichbrain_sub-0025156_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025156/ses-1/mri/lpba40_sub-0025156_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/lpba40_sub-0025156_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/m0wp1sub-0025156_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/m0wp1sub-0025156_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/m0wp2sub-0025156_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/m0wp2sub-0025156_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/m0wp3sub-0025156_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/m0wp3sub-0025156_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/mori_sub-0025156_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/mori_sub-0025156_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/mwp1sub-0025156_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/mwp1sub-0025156_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025156/ses-1/mri/mwp2sub-0025156_ses-1_run-1_T1w.nii.gz

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