[DATALAD RUNCMD] Compute NYU_2/sub-0025010/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025010/ses-1/anat/sub-0025010_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025010/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025010/ses-1/label/catROI_sub-0025010_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/40/ff/MD5E-s57630--07bbbc06f55c307a57b13918a08cb68a.mat/MD5E-s57630--07bbbc06f55c307a57b13918a08cb68a.mat

NYU_2/sub-0025010/ses-1/label/catROI_sub-0025010_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xq/1W/MD5E-s188761--82e7b3136da84968c6d25b366c38ae00.xml/MD5E-s188761--82e7b3136da84968c6d25b366c38ae00.xml

NYU_2/sub-0025010/ses-1/label/catROI_sub-0025010_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wj/89/MD5E-s57687--1edd5c8fd9e9d8776a75a900d33024f2.mat/MD5E-s57687--1edd5c8fd9e9d8776a75a900d33024f2.mat

NYU_2/sub-0025010/ses-1/label/catROI_sub-0025010_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8q/zk/MD5E-s188831--6ac7e1e613ccacd2bdd85d9334b025b1.xml/MD5E-s188831--6ac7e1e613ccacd2bdd85d9334b025b1.xml

NYU_2/sub-0025010/ses-1/label/catROIs_sub-0025010_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gv/Gf/MD5E-s120365--a5d2525bd83fd11387ae390880d382af.mat/MD5E-s120365--a5d2525bd83fd11387ae390880d382af.mat

NYU_2/sub-0025010/ses-1/label/catROIs_sub-0025010_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qG/G2/MD5E-s332151--a68f5d528c205aaf21342323119750b3.xml/MD5E-s332151--a68f5d528c205aaf21342323119750b3.xml

NYU_2/sub-0025010/ses-1/label/catROIs_sub-0025010_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/6x/MD5E-s120339--c8e07783910e36b0342027fa505fb1ce.mat/MD5E-s120339--c8e07783910e36b0342027fa505fb1ce.mat

NYU_2/sub-0025010/ses-1/label/catROIs_sub-0025010_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/76/MD5E-s332127--dc5307f457a4f085930a782f06789c5e.xml/MD5E-s332127--dc5307f457a4f085930a782f06789c5e.xml

NYU_2/sub-0025010/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/76/gv/MD5E-s139500--d32c208899e23416e8369c1480f2fc31.nii.gz/MD5E-s139500--d32c208899e23416e8369c1480f2fc31.nii.gz

NYU_2/sub-0025010/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/8X/MD5E-s139988--ca3bbedf8f3615a216dd976d57896a11.nii.gz/MD5E-s139988--ca3bbedf8f3615a216dd976d57896a11.nii.gz

NYU_2/sub-0025010/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4k/88/MD5E-s156258--480defb03b963c625fbed16f73bf9c97.nii.gz/MD5E-s156258--480defb03b963c625fbed16f73bf9c97.nii.gz

NYU_2/sub-0025010/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/zQ/MD5E-s156447--f4d9c6193c61a48e7aef2276e7667ef2.nii.gz/MD5E-s156447--f4d9c6193c61a48e7aef2276e7667ef2.nii.gz

NYU_2/sub-0025010/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QQ/ZG/MD5E-s209029--eea3d0d998e2be183da5e07813a02840.nii.gz/MD5E-s209029--eea3d0d998e2be183da5e07813a02840.nii.gz

NYU_2/sub-0025010/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/jJ/MD5E-s209706--5c62226dda101380f28a34c13bccb71d.nii.gz/MD5E-s209706--5c62226dda101380f28a34c13bccb71d.nii.gz

NYU_2/sub-0025010/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/v1/4J/MD5E-s232573--dd82fead06897df093038fdcd9e0b14e.nii.gz/MD5E-s232573--dd82fead06897df093038fdcd9e0b14e.nii.gz

NYU_2/sub-0025010/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5k/Kw/MD5E-s232565--191d0f6608397d034183e7febee10b97.nii.gz/MD5E-s232565--191d0f6608397d034183e7febee10b97.nii.gz

NYU_2/sub-0025010/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/M3/gV/MD5E-s18548--d6d836dc795d50f141dcfa9c6c5dee8d.nii.gz/MD5E-s18548--d6d836dc795d50f141dcfa9c6c5dee8d.nii.gz

NYU_2/sub-0025010/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/61/GG/MD5E-s18402--6845340d69242454d08f0f2ef6a99f1d.nii.gz/MD5E-s18402--6845340d69242454d08f0f2ef6a99f1d.nii.gz

NYU_2/sub-0025010/ses-1/mri/aal3_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pz/vv/MD5E-s156167--571d6fe0b3db0239a93c15155e1f4479.nii.gz/MD5E-s156167--571d6fe0b3db0239a93c15155e1f4479.nii.gz

NYU_2/sub-0025010/ses-1/mri/aal3_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5p/Qf/MD5E-s156881--a06b8a4398a3f9588e8fb24a5560a9fc.nii.gz/MD5E-s156881--a06b8a4398a3f9588e8fb24a5560a9fc.nii.gz

NYU_2/sub-0025010/ses-1/mri/anatomy3_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/WM/3p/MD5E-s112843--0b4f55355b5304ee9da240a8e53172e1.nii.gz/MD5E-s112843--0b4f55355b5304ee9da240a8e53172e1.nii.gz

NYU_2/sub-0025010/ses-1/mri/anatomy3_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/w7/MD5E-s113231--b047ca746a4fbfbd285eb9c5923637cc.nii.gz/MD5E-s113231--b047ca746a4fbfbd285eb9c5923637cc.nii.gz

NYU_2/sub-0025010/ses-1/mri/anon_misub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/84/mm/MD5E-s3042121--bbdf5a8a34df8031fc5e3649e6be03e6.nii.gz/MD5E-s3042121--bbdf5a8a34df8031fc5e3649e6be03e6.nii.gz

NYU_2/sub-0025010/ses-1/mri/anon_misub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VV/Fq/MD5E-s3043150--b41d2be10896fb8ac5d946e00a73ff9c.nii.gz/MD5E-s3043150--b41d2be10896fb8ac5d946e00a73ff9c.nii.gz

NYU_2/sub-0025010/ses-1/mri/anon_msub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fM/2Z/MD5E-s7289202--70debd51ebd921c867f6d62871d22eab.nii.gz/MD5E-s7289202--70debd51ebd921c867f6d62871d22eab.nii.gz

NYU_2/sub-0025010/ses-1/mri/anon_msub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/KP/MD5E-s7021855--e5db2f697211a898ecf992d1ceb98452.nii.gz/MD5E-s7021855--e5db2f697211a898ecf992d1ceb98452.nii.gz

NYU_2/sub-0025010/ses-1/mri/cat_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/z3/ZZ/MD5E-s82397--e76fc7b03fcfbcdfe1a203a3e5b906ef.nii.gz/MD5E-s82397--e76fc7b03fcfbcdfe1a203a3e5b906ef.nii.gz

NYU_2/sub-0025010/ses-1/mri/cat_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/x5/MD5E-s82396--c1ab055c6e54bf1afccd777e49d9a137.nii.gz/MD5E-s82396--c1ab055c6e54bf1afccd777e49d9a137.nii.gz

NYU_2/sub-0025010/ses-1/mri/cobra_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J6/VW/MD5E-s38446--19e4a7be05d31217823a8199e1e11c87.nii.gz/MD5E-s38446--19e4a7be05d31217823a8199e1e11c87.nii.gz

NYU_2/sub-0025010/ses-1/mri/cobra_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/v2/MD5E-s38822--dd453f0c8e035eb7fd40e041e647392b.nii.gz/MD5E-s38822--dd453f0c8e035eb7fd40e041e647392b.nii.gz

NYU_2/sub-0025010/ses-1/mri/hammers_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fW/K2/MD5E-s120537--c837a92c982e85a349b29a8bb3f7c1e0.nii.gz/MD5E-s120537--c837a92c982e85a349b29a8bb3f7c1e0.nii.gz

NYU_2/sub-0025010/ses-1/mri/hammers_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025010/ses-1/mri/ibsr_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7j/57/MD5E-s127199--c65852414e921ec26262755ca0afbf77.nii.gz/MD5E-s127199--c65852414e921ec26262755ca0afbf77.nii.gz

NYU_2/sub-0025010/ses-1/mri/ibsr_sub-0025010_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025010/ses-1/mri/it_sub-0025010_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vz/kJ/MD5E-s283--dd051a7dfa72467efb6970613f843d5a.mat/MD5E-s283--dd051a7dfa72467efb6970613f843d5a.mat

NYU_2/sub-0025010/ses-1/mri/it_sub-0025010_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/p6/V7/MD5E-s284--2d8143ac260b76b561ba7af331f5cef2.mat/MD5E-s284--2d8143ac260b76b561ba7af331f5cef2.mat

NYU_2/sub-0025010/ses-1/mri/it_sub-0025010_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/GZ/MD5E-s284--842af007ea5f219af69b286ca3b8cebf.mat/MD5E-s284--842af007ea5f219af69b286ca3b8cebf.mat

NYU_2/sub-0025010/ses-1/mri/it_sub-0025010_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025010/ses-1/mri/iy_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025010/ses-1/mri/iy_sub-0025010_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/julichbrain_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025010/ses-1/mri/julichbrain_sub-0025010_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/lpba40_sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025010/ses-1/mri/lpba40_sub-0025010_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/m0wp1sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025010/ses-1/mri/m0wp1sub-0025010_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/m0wp2sub-0025010_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/m0wp2sub-0025010_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/m0wp3sub-0025010_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/m0wp3sub-0025010_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/mori_sub-0025010_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/mori_sub-0025010_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/mwp1sub-0025010_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025010/ses-1/mri/mwp1sub-0025010_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025010/ses-1/mri/mwp2sub-0025010_ses-1_run-1_T1w.nii.gz

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