[DATALAD RUNCMD] Compute SWU_4/sub-0025830/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025830/ses-2/anat/sub-0025830_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025830/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025830/ses-2/label/catROI_sub-0025830_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zq/GQ/MD5E-s61269--20bf50315d5d472956a5e64ae0db8624.mat/MD5E-s61269--20bf50315d5d472956a5e64ae0db8624.mat

SWU_4/sub-0025830/ses-2/label/catROI_sub-0025830_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5w/WQ/MD5E-s188414--017e5d4b56bc12ed7e1aa61fb3bbbc52.xml/MD5E-s188414--017e5d4b56bc12ed7e1aa61fb3bbbc52.xml

SWU_4/sub-0025830/ses-2/label/catROIs_sub-0025830_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5P/wQ/MD5E-s120069--467731d45e9fb4fcadbe00694054d80c.mat/MD5E-s120069--467731d45e9fb4fcadbe00694054d80c.mat

SWU_4/sub-0025830/ses-2/label/catROIs_sub-0025830_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/F8/MD5E-s332171--cf484aaa3e5a36251bcf3e7f238daa47.xml/MD5E-s332171--cf484aaa3e5a36251bcf3e7f238daa47.xml

SWU_4/sub-0025830/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025830/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/zG/MD5E-s183473--47a48861e4950fe443f0fcfeac352a46.nii.gz/MD5E-s183473--47a48861e4950fe443f0fcfeac352a46.nii.gz

SWU_4/sub-0025830/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025830/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/J5/MD5E-s207712--ac6b62ed6df43b6395ff6c1a639bfad7.nii.gz/MD5E-s207712--ac6b62ed6df43b6395ff6c1a639bfad7.nii.gz

SWU_4/sub-0025830/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025830/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/19/w1/MD5E-s278646--c3bd79902cfb4b8458fd468dd2c146f0.nii.gz/MD5E-s278646--c3bd79902cfb4b8458fd468dd2c146f0.nii.gz

SWU_4/sub-0025830/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025830/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/w0/MD5E-s311083--a3546ff5640b47fe43b514f27b5ca417.nii.gz/MD5E-s311083--a3546ff5640b47fe43b514f27b5ca417.nii.gz

SWU_4/sub-0025830/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025830/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/6Z/MD5E-s25912--75da228afce4aee5f8b6883405c83e24.nii.gz/MD5E-s25912--75da228afce4aee5f8b6883405c83e24.nii.gz

SWU_4/sub-0025830/ses-2/mri/aal3_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025830/ses-2/mri/aal3_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3W/7x/MD5E-s208413--e0382c8d6bf157e4213520a9d0deed4f.nii.gz/MD5E-s208413--e0382c8d6bf157e4213520a9d0deed4f.nii.gz

SWU_4/sub-0025830/ses-2/mri/anatomy3_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025830/ses-2/mri/anatomy3_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/g5/MD5E-s152976--ae6baf87ae6cbd07a4e2a200559e9580.nii.gz/MD5E-s152976--ae6baf87ae6cbd07a4e2a200559e9580.nii.gz

SWU_4/sub-0025830/ses-2/mri/anon_misub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jZ/gz/MD5E-s10289185--cebd73965f6f24a0ec619da609bbd77b.nii.gz/MD5E-s10289185--cebd73965f6f24a0ec619da609bbd77b.nii.gz

SWU_4/sub-0025830/ses-2/mri/anon_msub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/mQ/MD5E-s11484317--9344b02c9ebdfc4e79aedeb87a4f547c.nii.gz/MD5E-s11484317--9344b02c9ebdfc4e79aedeb87a4f547c.nii.gz

SWU_4/sub-0025830/ses-2/mri/cat_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/MJ/MD5E-s114585--eb054923af8d926c0d2adce5ae037175.nii.gz/MD5E-s114585--eb054923af8d926c0d2adce5ae037175.nii.gz

SWU_4/sub-0025830/ses-2/mri/cobra_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025830/ses-2/mri/cobra_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/4X/MD5E-s53552--9420bbf947bbe97caf36025182238737.nii.gz/MD5E-s53552--9420bbf947bbe97caf36025182238737.nii.gz

SWU_4/sub-0025830/ses-2/mri/hammers_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025830/ses-2/mri/hammers_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/zk/MD5E-s165315--120176ad05a183b9c9813635cb6dac55.nii.gz/MD5E-s165315--120176ad05a183b9c9813635cb6dac55.nii.gz

SWU_4/sub-0025830/ses-2/mri/ibsr_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025830/ses-2/mri/ibsr_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5J/7J/MD5E-s174231--0c68107fd664bde4446f9968a4ea888e.nii.gz/MD5E-s174231--0c68107fd664bde4446f9968a4ea888e.nii.gz

SWU_4/sub-0025830/ses-2/mri/it_sub-0025830_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/q1/MD5E-s283--2dbe1793ca88ac7190732560b63d2d68.mat/MD5E-s283--2dbe1793ca88ac7190732560b63d2d68.mat

SWU_4/sub-0025830/ses-2/mri/it_sub-0025830_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gf/KK/MD5E-s283--bf86a98fa4ec12c770358f34fb7815f4.mat/MD5E-s283--bf86a98fa4ec12c770358f34fb7815f4.mat

SWU_4/sub-0025830/ses-2/mri/iy_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/Z6/MD5E-s54868221--4454213ff56f3b7c9cd2b32d8aa405ae.nii.gz/MD5E-s54868221--4454213ff56f3b7c9cd2b32d8aa405ae.nii.gz

SWU_4/sub-0025830/ses-2/mri/julichbrain_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025830/ses-2/mri/julichbrain_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025830/ses-2/mri/lpba40_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025830/ses-2/mri/lpba40_sub-0025830_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025830/ses-2/mri/m0wp1sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/Wf/MD5E-s2574755--f54775af0a83df1311b4922dcc9be3bf.nii.gz/MD5E-s2574755--f54775af0a83df1311b4922dcc9be3bf.nii.gz

SWU_4/sub-0025830/ses-2/mri/m0wp2sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/gV/MD5E-s2324517--feefffec187dc47116102a1803a930ff.nii.gz/MD5E-s2324517--feefffec187dc47116102a1803a930ff.nii.gz

SWU_4/sub-0025830/ses-2/mri/m0wp3sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wM/7k/MD5E-s2587775--e5f1763fa0fd6f4bfd950a02cce920dd.nii.gz/MD5E-s2587775--e5f1763fa0fd6f4bfd950a02cce920dd.nii.gz

SWU_4/sub-0025830/ses-2/mri/mori_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025830/ses-2/mri/mori_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9K/8F/MD5E-s192433--cffdbff6b00d457f37a01bcf8cb469bf.nii.gz/MD5E-s192433--cffdbff6b00d457f37a01bcf8cb469bf.nii.gz

SWU_4/sub-0025830/ses-2/mri/mwp1sub-0025830_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025830/ses-2/mri/mwp2sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/Pg/MD5E-s2323378--7edad000986ee7e55c9df92e9e24a190.nii.gz/MD5E-s2323378--7edad000986ee7e55c9df92e9e24a190.nii.gz

SWU_4/sub-0025830/ses-2/mri/mwp3sub-0025830_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025830/ses-2/mri/neuromorphometrics_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025830/ses-2/mri/neuromorphometrics_sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025830/ses-2/mri/p0sub-0025830_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/8F/MD5E-s772252--ae12d161f593edd03329c1aec5787b4b.nii.gz/MD5E-s772252--ae12d161f593edd03329c1aec5787b4b.nii.gz

SWU_4/sub-0025830/ses-2/mri/p1sub-0025830_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025830/ses-2/mri/p2sub-0025830_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025830/ses-2/mri/p3sub-0025830_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025830/ses-2/mri/rp1sub-0025830_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025830/ses-2/mri/rp2sub-0025830_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025830/ses-2/mri/rp3sub-0025830_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025830/ses-2/mri/t_sub-0025830_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/fx/MD5E-s284--fd028f5fcb5183fb4a9bc39dce21eac0.mat/MD5E-s284--fd028f5fcb5183fb4a9bc39dce21eac0.mat

SWU_4/sub-0025830/ses-2/mri/t_sub-0025830_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025830/ses-2/mri/thalamus_sub-0025830_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025830/ses-2/mri/thalamus_sub-0025830_ses-2_run-1_T1w.nii.gz

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