[DATALAD RUNCMD] Compute BMB_1/sub-0003014/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003014/ses-1/anat/sub-0003014_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003014/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003014/ses-1/label/catROI_sub-0003014_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/6p/MD5E-s61291--1126a8e128b993acac9a10c9797988fc.mat/MD5E-s61291--1126a8e128b993acac9a10c9797988fc.mat

BMB_1/sub-0003014/ses-1/label/catROI_sub-0003014_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/KM/MD5E-s188637--a59941d43d36b88225c9f1f1f106d0ec.xml/MD5E-s188637--a59941d43d36b88225c9f1f1f106d0ec.xml

BMB_1/sub-0003014/ses-1/label/catROIs_sub-0003014_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/Gg/MD5E-s120050--d5423829c4cf92bb204ea7cdb199ee87.mat/MD5E-s120050--d5423829c4cf92bb204ea7cdb199ee87.mat

BMB_1/sub-0003014/ses-1/label/catROIs_sub-0003014_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/F3/MD5E-s332115--6032ab6cb04bd2a5db982352d7ed9ac5.xml/MD5E-s332115--6032ab6cb04bd2a5db982352d7ed9ac5.xml

BMB_1/sub-0003014/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003014/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/Q0/MD5E-s182629--135e6859d428ef01f4152890df028e4b.nii.gz/MD5E-s182629--135e6859d428ef01f4152890df028e4b.nii.gz

BMB_1/sub-0003014/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003014/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/xv/MD5E-s206493--3b41364079356ea14f2135cc60cb26a6.nii.gz/MD5E-s206493--3b41364079356ea14f2135cc60cb26a6.nii.gz

BMB_1/sub-0003014/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003014/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5G/49/MD5E-s276892--90311a1d3d1346f5c2ced0c5d184cb9f.nii.gz/MD5E-s276892--90311a1d3d1346f5c2ced0c5d184cb9f.nii.gz

BMB_1/sub-0003014/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003014/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f8/4Z/MD5E-s308716--60059e1af299e9201205fecadfeb1499.nii.gz/MD5E-s308716--60059e1af299e9201205fecadfeb1499.nii.gz

BMB_1/sub-0003014/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003014/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/z4/MD5E-s25026--1cc914cb8f1539ccfdaf7e791d6d699d.nii.gz/MD5E-s25026--1cc914cb8f1539ccfdaf7e791d6d699d.nii.gz

BMB_1/sub-0003014/ses-1/mri/aal3_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003014/ses-1/mri/aal3_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3F/mj/MD5E-s206530--1eff24a097d1228b72afcf57ee462590.nii.gz/MD5E-s206530--1eff24a097d1228b72afcf57ee462590.nii.gz

BMB_1/sub-0003014/ses-1/mri/anatomy3_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003014/ses-1/mri/anatomy3_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/VG/MD5E-s151509--4de4a10282d616669aeec9a36aabac99.nii.gz/MD5E-s151509--4de4a10282d616669aeec9a36aabac99.nii.gz

BMB_1/sub-0003014/ses-1/mri/anon_misub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/M3/MD5E-s6760609--ce4860a5e1db3cab69f8bbf665a7877a.nii.gz/MD5E-s6760609--ce4860a5e1db3cab69f8bbf665a7877a.nii.gz

BMB_1/sub-0003014/ses-1/mri/anon_msub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/MV/MD5E-s13941553--d50d4cdfd7bdff626561b86c0eb16c82.nii.gz/MD5E-s13941553--d50d4cdfd7bdff626561b86c0eb16c82.nii.gz

BMB_1/sub-0003014/ses-1/mri/cat_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/K2/MD5E-s111235--27953eae2ba333feafd0097b96e8523b.nii.gz/MD5E-s111235--27953eae2ba333feafd0097b96e8523b.nii.gz

BMB_1/sub-0003014/ses-1/mri/cobra_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003014/ses-1/mri/cobra_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jJ/Xf/MD5E-s53011--265f22a0f94af0007c92eeb3936b6d70.nii.gz/MD5E-s53011--265f22a0f94af0007c92eeb3936b6d70.nii.gz

BMB_1/sub-0003014/ses-1/mri/hammers_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003014/ses-1/mri/hammers_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/0w/MD5E-s165401--b5e853349140524b11cb4c63808bfd66.nii.gz/MD5E-s165401--b5e853349140524b11cb4c63808bfd66.nii.gz

BMB_1/sub-0003014/ses-1/mri/ibsr_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003014/ses-1/mri/ibsr_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M7/9m/MD5E-s173687--40515cccd05acf15a1532b99573e2a87.nii.gz/MD5E-s173687--40515cccd05acf15a1532b99573e2a87.nii.gz

BMB_1/sub-0003014/ses-1/mri/it_sub-0003014_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/Zg/MD5E-s283--c559ba6e0c1293f3fb3caf9bfe26b2b7.mat/MD5E-s283--c559ba6e0c1293f3fb3caf9bfe26b2b7.mat

BMB_1/sub-0003014/ses-1/mri/it_sub-0003014_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/FG/MD5E-s282--6f53fe7b98f798bc50016ab00f22106a.mat/MD5E-s282--6f53fe7b98f798bc50016ab00f22106a.mat

BMB_1/sub-0003014/ses-1/mri/iy_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F3/zf/MD5E-s52634701--88868f03a58d491be82d4135dd47982b.nii.gz/MD5E-s52634701--88868f03a58d491be82d4135dd47982b.nii.gz

BMB_1/sub-0003014/ses-1/mri/julichbrain_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003014/ses-1/mri/julichbrain_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/Kq/MD5E-s221768--ade91eb96f7854142407d0b280eb2700.nii.gz/MD5E-s221768--ade91eb96f7854142407d0b280eb2700.nii.gz

BMB_1/sub-0003014/ses-1/mri/lpba40_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003014/ses-1/mri/lpba40_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/F9/MD5E-s160764--ec246536dcb545d17eb413fdf9f1985b.nii.gz/MD5E-s160764--ec246536dcb545d17eb413fdf9f1985b.nii.gz

BMB_1/sub-0003014/ses-1/mri/m0wp1sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/3W/MD5E-s2583146--1bc235c3ea0804df5b6fc1ef31e810ad.nii.gz/MD5E-s2583146--1bc235c3ea0804df5b6fc1ef31e810ad.nii.gz

BMB_1/sub-0003014/ses-1/mri/m0wp2sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pm/pG/MD5E-s2303971--addb5bd153b45f898de6accd88dfc860.nii.gz/MD5E-s2303971--addb5bd153b45f898de6accd88dfc860.nii.gz

BMB_1/sub-0003014/ses-1/mri/m0wp3sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/mw/MD5E-s2569491--7cdc7d53e2f041dd58a586217e8237ff.nii.gz/MD5E-s2569491--7cdc7d53e2f041dd58a586217e8237ff.nii.gz

BMB_1/sub-0003014/ses-1/mri/mori_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003014/ses-1/mri/mori_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/01/MD5E-s190402--0619682dfcecf1e8bafa21e858c1a89d.nii.gz/MD5E-s190402--0619682dfcecf1e8bafa21e858c1a89d.nii.gz

BMB_1/sub-0003014/ses-1/mri/mwp1sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/m4/MD5E-s2583023--3f2c06f5b25fe0479e593f5b61cca719.nii.gz/MD5E-s2583023--3f2c06f5b25fe0479e593f5b61cca719.nii.gz

BMB_1/sub-0003014/ses-1/mri/mwp2sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/WJ/MD5E-s2303339--df06e974c0c6b44090c5cb9ef2b33c37.nii.gz/MD5E-s2303339--df06e974c0c6b44090c5cb9ef2b33c37.nii.gz

BMB_1/sub-0003014/ses-1/mri/mwp3sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/jj/MD5E-s2568717--7bc691c3d251f33aa15a188b101db491.nii.gz/MD5E-s2568717--7bc691c3d251f33aa15a188b101db491.nii.gz

BMB_1/sub-0003014/ses-1/mri/neuromorphometrics_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003014/ses-1/mri/neuromorphometrics_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/fQ/MD5E-s223976--6c9b53dfd2f773020e225b43a87e88a0.nii.gz/MD5E-s223976--6c9b53dfd2f773020e225b43a87e88a0.nii.gz

BMB_1/sub-0003014/ses-1/mri/p0sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Z/38/MD5E-s752235--7ed2fa00a9210f0c89c8efdc07c9379e.nii.gz/MD5E-s752235--7ed2fa00a9210f0c89c8efdc07c9379e.nii.gz

BMB_1/sub-0003014/ses-1/mri/p1sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/M4/MD5E-s795801--1a77152cfaef7dc437fa444cd836e4d4.nii.gz/MD5E-s795801--1a77152cfaef7dc437fa444cd836e4d4.nii.gz

BMB_1/sub-0003014/ses-1/mri/p2sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/J1/MD5E-s513903--8d17a4ca4fcc07f2bf9c37bc52b898ee.nii.gz/MD5E-s513903--8d17a4ca4fcc07f2bf9c37bc52b898ee.nii.gz

BMB_1/sub-0003014/ses-1/mri/p3sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xq/fX/MD5E-s471923--f86d80070bb4ede78518b82a564602d7.nii.gz/MD5E-s471923--f86d80070bb4ede78518b82a564602d7.nii.gz

BMB_1/sub-0003014/ses-1/mri/rp1sub-0003014_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j0/ZQ/MD5E-s443851--b7ab729c584c414009f439dca1d9ce3a.nii.gz/MD5E-s443851--b7ab729c584c414009f439dca1d9ce3a.nii.gz

BMB_1/sub-0003014/ses-1/mri/rp2sub-0003014_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/3v/MD5E-s300750--5ed3506ae87aeeadc876cedb2ddf573c.nii.gz/MD5E-s300750--5ed3506ae87aeeadc876cedb2ddf573c.nii.gz

BMB_1/sub-0003014/ses-1/mri/rp3sub-0003014_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/zJ/MD5E-s300419--155819ab86f2e1c11086669f16081039.nii.gz/MD5E-s300419--155819ab86f2e1c11086669f16081039.nii.gz

BMB_1/sub-0003014/ses-1/mri/t_sub-0003014_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/8Q/MD5E-s282--59cf56730a91a10f73b4f72737c9cc6e.mat/MD5E-s282--59cf56730a91a10f73b4f72737c9cc6e.mat

BMB_1/sub-0003014/ses-1/mri/t_sub-0003014_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/MJ/MD5E-s282--f8804ae7521327077348ee3ccef764b2.mat/MD5E-s282--f8804ae7521327077348ee3ccef764b2.mat

BMB_1/sub-0003014/ses-1/mri/thalamus_sub-0003014_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003014/ses-1/mri/thalamus_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/61/FK/MD5E-s16929--cd65bc9f1a584a996a7e075393ac5942.nii.gz/MD5E-s16929--cd65bc9f1a584a996a7e075393ac5942.nii.gz

BMB_1/sub-0003014/ses-1/mri/wj_sub-0003014_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003014/ses-1/mri/wmisub-0003014_ses-1_run-1_T1w.nii.gz

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