[DATALAD RUNCMD] Compute NYU_2/sub-0025110/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025110/ses-1/anat/sub-0025110_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025110/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025110/ses-1/label/catROI_sub-0025110_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xV/xq/MD5E-s58387--b105265505ca8d48b53d339118d7af6f.mat/MD5E-s58387--b105265505ca8d48b53d339118d7af6f.mat

NYU_2/sub-0025110/ses-1/label/catROI_sub-0025110_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zq/19/MD5E-s188582--4fb8fa236aa58e7b0970cdf19d575c0e.xml/MD5E-s188582--4fb8fa236aa58e7b0970cdf19d575c0e.xml

NYU_2/sub-0025110/ses-1/label/catROI_sub-0025110_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/p4/8F/MD5E-s58337--d8919f8fe122d938ef8f158fced4a842.mat/MD5E-s58337--d8919f8fe122d938ef8f158fced4a842.mat

NYU_2/sub-0025110/ses-1/label/catROI_sub-0025110_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/14/qw/MD5E-s188734--bfaef6e42b985d18fb8fb81a506a6999.xml/MD5E-s188734--bfaef6e42b985d18fb8fb81a506a6999.xml

NYU_2/sub-0025110/ses-1/label/catROIs_sub-0025110_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/5x/MD5E-s120182--8f8f51f1d8fb9abfeec9ec7228c636cf.mat/MD5E-s120182--8f8f51f1d8fb9abfeec9ec7228c636cf.mat

NYU_2/sub-0025110/ses-1/label/catROIs_sub-0025110_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
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NYU_2/sub-0025110/ses-1/label/catROIs_sub-0025110_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6X/31/MD5E-s120204--38b1527c27945b272eef4c9b01de47ba.mat/MD5E-s120204--38b1527c27945b272eef4c9b01de47ba.mat

NYU_2/sub-0025110/ses-1/label/catROIs_sub-0025110_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/21/jv/MD5E-s332065--a483e45f0082388d1e9ba4a0e9eb1a9d.xml/MD5E-s332065--a483e45f0082388d1e9ba4a0e9eb1a9d.xml

NYU_2/sub-0025110/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025110_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/7G/MD5E-s162035--53abb056665b87043464db353810f869.nii.gz/MD5E-s162035--53abb056665b87043464db353810f869.nii.gz

NYU_2/sub-0025110/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025110_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025110/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025110_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/2p/MD5E-s181414--1d2bae05fa6c17a193515b089d485a3e.nii.gz/MD5E-s181414--1d2bae05fa6c17a193515b089d485a3e.nii.gz

NYU_2/sub-0025110/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025110_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Pw/mX/MD5E-s182311--a3ccd6b934d193ac0bb860c814363ab9.nii.gz/MD5E-s182311--a3ccd6b934d193ac0bb860c814363ab9.nii.gz

NYU_2/sub-0025110/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025110_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025110/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025110_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/86/VQ/MD5E-s271212--974c3753024976ea8f7f35548ae4d3ba.nii.gz/MD5E-s271212--974c3753024976ea8f7f35548ae4d3ba.nii.gz

NYU_2/sub-0025110/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025110_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025110/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025110_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/X6/gq/MD5E-s19930--cc44eb4c14fadf5d3a076bcfbae0c34d.nii.gz/MD5E-s19930--cc44eb4c14fadf5d3a076bcfbae0c34d.nii.gz

NYU_2/sub-0025110/ses-1/mri/aal3_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/aal3_sub-0025110_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025110/ses-1/mri/anatomy3_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/anatomy3_sub-0025110_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qK/1g/MD5E-s128875--32ec9c048ed631a134c95ea54f8b4569.nii.gz/MD5E-s128875--32ec9c048ed631a134c95ea54f8b4569.nii.gz

NYU_2/sub-0025110/ses-1/mri/anon_misub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/anon_misub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/anon_msub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/anon_msub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/cat_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/cat_sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/cobra_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/cobra_sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/hammers_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/hammers_sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/ibsr_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/ibsr_sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/it_sub-0025110_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025110/ses-1/mri/it_sub-0025110_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025110/ses-1/mri/it_sub-0025110_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025110/ses-1/mri/it_sub-0025110_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025110/ses-1/mri/iy_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/iy_sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/julichbrain_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/julichbrain_sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/lpba40_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/lpba40_sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/m0wp1sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/m0wp1sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/m0wp2sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/m0wp2sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/m0wp3sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/m0wp3sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/mori_sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/mori_sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/mwp1sub-0025110_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/mwp1sub-0025110_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025110/ses-1/mri/mwp2sub-0025110_ses-1_run-1_T1w.nii.gz

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