[DATALAD RUNCMD] Compute BNU_2/sub-0025978/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025978/ses-1/anat/sub-0025978_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025978/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025978/ses-1/label/catROI_sub-0025978_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3W/FW/MD5E-s57698--0ad6f52644028d42f1cbab101c40c0ea.mat/MD5E-s57698--0ad6f52644028d42f1cbab101c40c0ea.mat

BNU_2/sub-0025978/ses-1/label/catROI_sub-0025978_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/0x/MD5E-s188886--39191c78a649412660d38e8a1621abb7.xml/MD5E-s188886--39191c78a649412660d38e8a1621abb7.xml

BNU_2/sub-0025978/ses-1/label/catROIs_sub-0025978_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/g6/MD5E-s120073--d578dbb46a9beb2cf6f5f06dea64951e.mat/MD5E-s120073--d578dbb46a9beb2cf6f5f06dea64951e.mat

BNU_2/sub-0025978/ses-1/label/catROIs_sub-0025978_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/97/MD5E-s332190--f2c65c5456fe159b6c5ed38e186cf1d7.xml/MD5E-s332190--f2c65c5456fe159b6c5ed38e186cf1d7.xml

BNU_2/sub-0025978/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025978/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/xm/MD5E-s137532--0a054e4bc8e60e153d26dace8d823d99.nii.gz/MD5E-s137532--0a054e4bc8e60e153d26dace8d823d99.nii.gz

BNU_2/sub-0025978/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025978/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/g2/MD5E-s152975--1756d3c7452355c93e8f686d17b7cdd3.nii.gz/MD5E-s152975--1756d3c7452355c93e8f686d17b7cdd3.nii.gz

BNU_2/sub-0025978/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025978/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jz/67/MD5E-s206728--7946d964cc4b575e7f5466a4b6a9d561.nii.gz/MD5E-s206728--7946d964cc4b575e7f5466a4b6a9d561.nii.gz

BNU_2/sub-0025978/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025978/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/kx/MD5E-s228141--3c41fd76c3fb4f836e1e80a705b4bf13.nii.gz/MD5E-s228141--3c41fd76c3fb4f836e1e80a705b4bf13.nii.gz

BNU_2/sub-0025978/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025978/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5P/6f/MD5E-s18931--b58bb61e2a18ce35dca945041860c0c5.nii.gz/MD5E-s18931--b58bb61e2a18ce35dca945041860c0c5.nii.gz

BNU_2/sub-0025978/ses-1/mri/aal3_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025978/ses-1/mri/aal3_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/4J/MD5E-s155740--cf58725b25d2d8659ab9c6f81b0f7b4d.nii.gz/MD5E-s155740--cf58725b25d2d8659ab9c6f81b0f7b4d.nii.gz

BNU_2/sub-0025978/ses-1/mri/anatomy3_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025978/ses-1/mri/anatomy3_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/88/P9/MD5E-s109803--2f2b944707a56a71c6c6fc836e2dd0c1.nii.gz/MD5E-s109803--2f2b944707a56a71c6c6fc836e2dd0c1.nii.gz

BNU_2/sub-0025978/ses-1/mri/anon_misub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/5V/MD5E-s3606925--0bdcfc3518ef60ba2bbbdd56e1fda740.nii.gz/MD5E-s3606925--0bdcfc3518ef60ba2bbbdd56e1fda740.nii.gz

BNU_2/sub-0025978/ses-1/mri/anon_msub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vz/11/MD5E-s9111950--50172a4b1e3aade418d4e784d97a5a3e.nii.gz/MD5E-s9111950--50172a4b1e3aade418d4e784d97a5a3e.nii.gz

BNU_2/sub-0025978/ses-1/mri/cat_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/58/WV/MD5E-s83532--e2235a0ced52f692018ec6e580a35752.nii.gz/MD5E-s83532--e2235a0ced52f692018ec6e580a35752.nii.gz

BNU_2/sub-0025978/ses-1/mri/cobra_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025978/ses-1/mri/cobra_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/m7/MD5E-s40346--d7ddac18adc97c838d53c3e06ca51bed.nii.gz/MD5E-s40346--d7ddac18adc97c838d53c3e06ca51bed.nii.gz

BNU_2/sub-0025978/ses-1/mri/hammers_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025978/ses-1/mri/hammers_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/f0/MD5E-s123698--4a8d616db6ad2b795a54330281adea05.nii.gz/MD5E-s123698--4a8d616db6ad2b795a54330281adea05.nii.gz

BNU_2/sub-0025978/ses-1/mri/ibsr_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025978/ses-1/mri/ibsr_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/8Z/MD5E-s129780--7b606ff51aaa23e26bd402278308453b.nii.gz/MD5E-s129780--7b606ff51aaa23e26bd402278308453b.nii.gz

BNU_2/sub-0025978/ses-1/mri/it_sub-0025978_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p6/3P/MD5E-s283--c09600a531c13295fc6371b922ada5c5.mat/MD5E-s283--c09600a531c13295fc6371b922ada5c5.mat

BNU_2/sub-0025978/ses-1/mri/it_sub-0025978_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/Qq/MD5E-s282--118766e990eccf4d736a547c4d2b768a.mat/MD5E-s282--118766e990eccf4d736a547c4d2b768a.mat

BNU_2/sub-0025978/ses-1/mri/iy_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WQ/FZ/MD5E-s32091151--a3f5b07556cc4c839ac928a799cfec50.nii.gz/MD5E-s32091151--a3f5b07556cc4c839ac928a799cfec50.nii.gz

BNU_2/sub-0025978/ses-1/mri/julichbrain_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025978/ses-1/mri/julichbrain_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2m/P4/MD5E-s164621--b9bc5005b439687378269686d29d38e1.nii.gz/MD5E-s164621--b9bc5005b439687378269686d29d38e1.nii.gz

BNU_2/sub-0025978/ses-1/mri/lpba40_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025978/ses-1/mri/lpba40_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025978/ses-1/mri/m0wp1sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qM/m9/MD5E-s2581434--befd02c67c955f865024b3d1f08fe448.nii.gz/MD5E-s2581434--befd02c67c955f865024b3d1f08fe448.nii.gz

BNU_2/sub-0025978/ses-1/mri/m0wp2sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/MX/MD5E-s2264912--748602fac7ffed56ae4aa665a6e1a828.nii.gz/MD5E-s2264912--748602fac7ffed56ae4aa665a6e1a828.nii.gz

BNU_2/sub-0025978/ses-1/mri/m0wp3sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/mp/MD5E-s2451141--9157a82faf37b0c404bbe316a9af8f69.nii.gz/MD5E-s2451141--9157a82faf37b0c404bbe316a9af8f69.nii.gz

BNU_2/sub-0025978/ses-1/mri/mori_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025978/ses-1/mri/mori_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/QP/MD5E-s143279--150323812d4cc8ca0cfe9033ae4a41d8.nii.gz/MD5E-s143279--150323812d4cc8ca0cfe9033ae4a41d8.nii.gz

BNU_2/sub-0025978/ses-1/mri/mwp1sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/km/57/MD5E-s2587832--ce93a0d2df7e7408341eda9e4aa815c0.nii.gz/MD5E-s2587832--ce93a0d2df7e7408341eda9e4aa815c0.nii.gz

BNU_2/sub-0025978/ses-1/mri/mwp2sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1f/Kw/MD5E-s2265986--45030081e3303bcc8a17061a1744afee.nii.gz/MD5E-s2265986--45030081e3303bcc8a17061a1744afee.nii.gz

BNU_2/sub-0025978/ses-1/mri/mwp3sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025978/ses-1/mri/neuromorphometrics_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025978/ses-1/mri/neuromorphometrics_sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025978/ses-1/mri/p0sub-0025978_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025978/ses-1/mri/p1sub-0025978_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025978/ses-1/mri/p2sub-0025978_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025978/ses-1/mri/p3sub-0025978_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025978/ses-1/mri/rp1sub-0025978_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025978/ses-1/mri/rp2sub-0025978_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025978/ses-1/mri/rp3sub-0025978_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025978/ses-1/mri/t_sub-0025978_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025978/ses-1/mri/t_sub-0025978_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025978/ses-1/mri/thalamus_sub-0025978_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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