[DATALAD RUNCMD] Compute BNU_1/sub-0025898/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025898/ses-2/anat/sub-0025898_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025898/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025898/ses-2/label/catROI_sub-0025898_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6k/4m/MD5E-s61313--5e7ef050570e9ba4b191cc8233cf79a1.mat/MD5E-s61313--5e7ef050570e9ba4b191cc8233cf79a1.mat

BNU_1/sub-0025898/ses-2/label/catROI_sub-0025898_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/3q/MD5E-s188945--9ace7e02f9e314193c10820eb011ec8b.xml/MD5E-s188945--9ace7e02f9e314193c10820eb011ec8b.xml

BNU_1/sub-0025898/ses-2/label/catROIs_sub-0025898_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/v5/MD5E-s120036--c26a590657e2611ccf7069fbb5f2c9a2.mat/MD5E-s120036--c26a590657e2611ccf7069fbb5f2c9a2.mat

BNU_1/sub-0025898/ses-2/label/catROIs_sub-0025898_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/z6/MD5E-s332159--86c45889ff2077362a2cbbff44fd2aec.xml/MD5E-s332159--86c45889ff2077362a2cbbff44fd2aec.xml

BNU_1/sub-0025898/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025898/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/5F/MD5E-s143775--88131de693142019fc78d977c89eb0ae.nii.gz/MD5E-s143775--88131de693142019fc78d977c89eb0ae.nii.gz

BNU_1/sub-0025898/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025898/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2x/27/MD5E-s163272--563601c83f9897059ebe40a50fffdeb0.nii.gz/MD5E-s163272--563601c83f9897059ebe40a50fffdeb0.nii.gz

BNU_1/sub-0025898/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025898/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/fM/MD5E-s219201--f1dde16205ffed55f94ceac4515eb19a.nii.gz/MD5E-s219201--f1dde16205ffed55f94ceac4515eb19a.nii.gz

BNU_1/sub-0025898/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025898/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2q/q7/MD5E-s244573--1a5ecdfb2535eaccf1cd9b57983ea53b.nii.gz/MD5E-s244573--1a5ecdfb2535eaccf1cd9b57983ea53b.nii.gz

BNU_1/sub-0025898/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025898/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/PP/MD5E-s20387--573dc26a23f855101d97eb18ff7e88b7.nii.gz/MD5E-s20387--573dc26a23f855101d97eb18ff7e88b7.nii.gz

BNU_1/sub-0025898/ses-2/mri/aal3_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025898/ses-2/mri/aal3_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5m/4J/MD5E-s165301--49fe0f3e967ba6dc5ec19998a317da8c.nii.gz/MD5E-s165301--49fe0f3e967ba6dc5ec19998a317da8c.nii.gz

BNU_1/sub-0025898/ses-2/mri/anatomy3_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025898/ses-2/mri/anatomy3_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/fv/MD5E-s116528--6acaba010d86f5268f20ea6929e920f3.nii.gz/MD5E-s116528--6acaba010d86f5268f20ea6929e920f3.nii.gz

BNU_1/sub-0025898/ses-2/mri/anon_misub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/VW/MD5E-s3778933--10e63a93fce50310c5b63f17a0022e09.nii.gz/MD5E-s3778933--10e63a93fce50310c5b63f17a0022e09.nii.gz

BNU_1/sub-0025898/ses-2/mri/anon_msub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/j3/MD5E-s10358841--6784bab94c69dcad5a97cf4f20ab95ab.nii.gz/MD5E-s10358841--6784bab94c69dcad5a97cf4f20ab95ab.nii.gz

BNU_1/sub-0025898/ses-2/mri/cat_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/M9/MD5E-s88052--37cf5437a4e459a2825e6982a963aec8.nii.gz/MD5E-s88052--37cf5437a4e459a2825e6982a963aec8.nii.gz

BNU_1/sub-0025898/ses-2/mri/cobra_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025898/ses-2/mri/cobra_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/0k/MD5E-s41930--a1c44f25bdff849b25a332aa91b0fcbf.nii.gz/MD5E-s41930--a1c44f25bdff849b25a332aa91b0fcbf.nii.gz

BNU_1/sub-0025898/ses-2/mri/hammers_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025898/ses-2/mri/hammers_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/JF/MD5E-s131931--0be7a5f18b77b8d8831fd1d4a767f7bf.nii.gz/MD5E-s131931--0be7a5f18b77b8d8831fd1d4a767f7bf.nii.gz

BNU_1/sub-0025898/ses-2/mri/ibsr_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025898/ses-2/mri/ibsr_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/Kx/MD5E-s137935--8a2b548430a0e4b627ebfa47ce082cea.nii.gz/MD5E-s137935--8a2b548430a0e4b627ebfa47ce082cea.nii.gz

BNU_1/sub-0025898/ses-2/mri/it_sub-0025898_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/85/MD5E-s283--ee9e56f1d44f0fee362a60cd47d50886.mat/MD5E-s283--ee9e56f1d44f0fee362a60cd47d50886.mat

BNU_1/sub-0025898/ses-2/mri/it_sub-0025898_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0J/MV/MD5E-s283--3a844b2fa2b07f98a0cd9366cefabddb.mat/MD5E-s283--3a844b2fa2b07f98a0cd9366cefabddb.mat

BNU_1/sub-0025898/ses-2/mri/iy_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m7/5K/MD5E-s34468517--5e9372c0318d0586c7da25ab794245a1.nii.gz/MD5E-s34468517--5e9372c0318d0586c7da25ab794245a1.nii.gz

BNU_1/sub-0025898/ses-2/mri/julichbrain_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025898/ses-2/mri/julichbrain_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/pv/MD5E-s174952--1848da203d6761f398df1c16807fb959.nii.gz/MD5E-s174952--1848da203d6761f398df1c16807fb959.nii.gz

BNU_1/sub-0025898/ses-2/mri/lpba40_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025898/ses-2/mri/lpba40_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/JP/MD5E-s129984--6a380c3e95c38316d1f502db096cc564.nii.gz/MD5E-s129984--6a380c3e95c38316d1f502db096cc564.nii.gz

BNU_1/sub-0025898/ses-2/mri/m0wp1sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/1f/MD5E-s2575955--04f42121e56d6ba7a3e4c575e224160d.nii.gz/MD5E-s2575955--04f42121e56d6ba7a3e4c575e224160d.nii.gz

BNU_1/sub-0025898/ses-2/mri/m0wp2sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/5g/MD5E-s2268649--72fbae42352bdb00c652c7a23c9a86d6.nii.gz/MD5E-s2268649--72fbae42352bdb00c652c7a23c9a86d6.nii.gz

BNU_1/sub-0025898/ses-2/mri/m0wp3sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/6J/MD5E-s2464305--a83c0a1e1bbc0f0a8e02f4907b0a83bf.nii.gz/MD5E-s2464305--a83c0a1e1bbc0f0a8e02f4907b0a83bf.nii.gz

BNU_1/sub-0025898/ses-2/mri/mori_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025898/ses-2/mri/mori_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/5f/MD5E-s152330--0d3b0eeef979c83cf4c4e89aa7c128f6.nii.gz/MD5E-s152330--0d3b0eeef979c83cf4c4e89aa7c128f6.nii.gz

BNU_1/sub-0025898/ses-2/mri/mwp1sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/6K/MD5E-s2578430--4ca848a45823e95b744491aaa28aa1df.nii.gz/MD5E-s2578430--4ca848a45823e95b744491aaa28aa1df.nii.gz

BNU_1/sub-0025898/ses-2/mri/mwp2sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q0/m5/MD5E-s2266371--98b484e32b89fc957f63eb53253857e5.nii.gz/MD5E-s2266371--98b484e32b89fc957f63eb53253857e5.nii.gz

BNU_1/sub-0025898/ses-2/mri/mwp3sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/57/MM/MD5E-s2461556--20960ff49a7b6d15ea213b801976ee97.nii.gz/MD5E-s2461556--20960ff49a7b6d15ea213b801976ee97.nii.gz

BNU_1/sub-0025898/ses-2/mri/neuromorphometrics_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025898/ses-2/mri/neuromorphometrics_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gm/38/MD5E-s179382--f091a9521d2ebaf107d794b3eb914629.nii.gz/MD5E-s179382--f091a9521d2ebaf107d794b3eb914629.nii.gz

BNU_1/sub-0025898/ses-2/mri/p0sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025898/ses-2/mri/p1sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025898/ses-2/mri/p2sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025898/ses-2/mri/p3sub-0025898_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025898/ses-2/mri/rp1sub-0025898_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025898/ses-2/mri/rp2sub-0025898_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025898/ses-2/mri/rp3sub-0025898_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025898/ses-2/mri/t_sub-0025898_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025898/ses-2/mri/t_sub-0025898_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/6Q/MD5E-s283--c027944844dd8751fc619aa190a56f51.mat/MD5E-s283--c027944844dd8751fc619aa190a56f51.mat

BNU_1/sub-0025898/ses-2/mri/thalamus_sub-0025898_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025898/ses-2/mri/thalamus_sub-0025898_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025898/ses-2/mri/wj_sub-0025898_ses-2_run-1_T1w.nii.gz

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