[DATALAD RUNCMD] Compute NYU_2/sub-0025037/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025037/ses-2/anat/sub-0025037_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025037/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025037/ses-2/label/catROI_sub-0025037_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/MP/MD5E-s57819--eb1e03f03b1b183c3b1b8240ca12de20.mat/MD5E-s57819--eb1e03f03b1b183c3b1b8240ca12de20.mat

NYU_2/sub-0025037/ses-2/label/catROI_sub-0025037_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VW/7X/MD5E-s188762--37658a3a23dd9f1bb20c7f8f0ca27fed.xml/MD5E-s188762--37658a3a23dd9f1bb20c7f8f0ca27fed.xml

NYU_2/sub-0025037/ses-2/label/catROI_sub-0025037_ses-2_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/j0/6Z/MD5E-s57903--0f6908cf01b5c71fc70e981c75e0fdab.mat/MD5E-s57903--0f6908cf01b5c71fc70e981c75e0fdab.mat

NYU_2/sub-0025037/ses-2/label/catROI_sub-0025037_ses-2_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/p0/Pp/MD5E-s188951--9c2209c75c389545ee826ff60a3102c7.xml/MD5E-s188951--9c2209c75c389545ee826ff60a3102c7.xml

NYU_2/sub-0025037/ses-2/label/catROIs_sub-0025037_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VJ/Fz/MD5E-s120220--1e4fb3c0c77770dad81d0a7a46626a9c.mat/MD5E-s120220--1e4fb3c0c77770dad81d0a7a46626a9c.mat

NYU_2/sub-0025037/ses-2/label/catROIs_sub-0025037_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
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NYU_2/sub-0025037/ses-2/label/catROIs_sub-0025037_ses-2_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J2/4z/MD5E-s120258--aef6c98951c82298adf635aa56537f79.mat/MD5E-s120258--aef6c98951c82298adf635aa56537f79.mat

NYU_2/sub-0025037/ses-2/label/catROIs_sub-0025037_ses-2_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gx/9W/MD5E-s332069--28a7ec0b97c082337a4896cc0d84363c.xml/MD5E-s332069--28a7ec0b97c082337a4896cc0d84363c.xml

NYU_2/sub-0025037/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025037_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/5m/MD5E-s147156--138c1b262398742ec22b8cbf0b7efa81.nii.gz/MD5E-s147156--138c1b262398742ec22b8cbf0b7efa81.nii.gz

NYU_2/sub-0025037/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025037_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kp/8G/MD5E-s146795--91b6ceca15d7fcd978f8a821389e0786.nii.gz/MD5E-s146795--91b6ceca15d7fcd978f8a821389e0786.nii.gz

NYU_2/sub-0025037/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025037_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/J0/MD5E-s163361--97d420ea311a50daef866c1c5e21959f.nii.gz/MD5E-s163361--97d420ea311a50daef866c1c5e21959f.nii.gz

NYU_2/sub-0025037/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025037_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4z/qz/MD5E-s163798--535ee087a739511edcffe6f26ef50bed.nii.gz/MD5E-s163798--535ee087a739511edcffe6f26ef50bed.nii.gz

NYU_2/sub-0025037/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025037_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QG/5f/MD5E-s221241--9e4cc9dc12d32347d86475fce64b0dcf.nii.gz/MD5E-s221241--9e4cc9dc12d32347d86475fce64b0dcf.nii.gz

NYU_2/sub-0025037/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025037_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gW/xW/MD5E-s244717--67cc4aeea18a55448702a7186079351c.nii.gz/MD5E-s244717--67cc4aeea18a55448702a7186079351c.nii.gz

NYU_2/sub-0025037/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025037_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025037/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025037_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jk/71/MD5E-s20094--6e4b26a1242c5091b1e2aa737633527b.nii.gz/MD5E-s20094--6e4b26a1242c5091b1e2aa737633527b.nii.gz

NYU_2/sub-0025037/ses-2/mri/aal3_sub-0025037_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PQ/g3/MD5E-s168477--8adeea2b7ea8a084b49f636df5d28a20.nii.gz/MD5E-s168477--8adeea2b7ea8a084b49f636df5d28a20.nii.gz

NYU_2/sub-0025037/ses-2/mri/aal3_sub-0025037_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025037/ses-2/mri/anatomy3_sub-0025037_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/QG/MD5E-s117191--42f509389ed0c3850ef033aa57d4326d.nii.gz/MD5E-s117191--42f509389ed0c3850ef033aa57d4326d.nii.gz

NYU_2/sub-0025037/ses-2/mri/anatomy3_sub-0025037_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025037/ses-2/mri/anon_misub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/anon_misub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/anon_msub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/anon_msub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/cat_sub-0025037_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/v1/gg/MD5E-s89350--fd1865a6aa7fcad74c1fbff871e30df9.nii.gz/MD5E-s89350--fd1865a6aa7fcad74c1fbff871e30df9.nii.gz

NYU_2/sub-0025037/ses-2/mri/cat_sub-0025037_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025037/ses-2/mri/cobra_sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/cobra_sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/hammers_sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/hammers_sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/ibsr_sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/ibsr_sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/it_sub-0025037_ses-2_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025037/ses-2/mri/it_sub-0025037_ses-2_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025037/ses-2/mri/it_sub-0025037_ses-2_run-2_T1w_affine_reorient.mat

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NYU_2/sub-0025037/ses-2/mri/it_sub-0025037_ses-2_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025037/ses-2/mri/iy_sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/iy_sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/julichbrain_sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/julichbrain_sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/lpba40_sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/lpba40_sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/m0wp1sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/m0wp1sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/m0wp2sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/m0wp2sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/m0wp3sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/m0wp3sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/mori_sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/mori_sub-0025037_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/mwp1sub-0025037_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025037/ses-2/mri/mwp1sub-0025037_ses-2_run-2_T1w.nii.gz

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