[DATALAD RUNCMD] Compute BNU_1/sub-0025901/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025901/ses-2/anat/sub-0025901_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025901/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025901/ses-2/label/catROI_sub-0025901_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/4F/MD5E-s61203--b4502029239e9b4585c685c47cd249d6.mat/MD5E-s61203--b4502029239e9b4585c685c47cd249d6.mat

BNU_1/sub-0025901/ses-2/label/catROI_sub-0025901_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/3x/MD5E-s189075--975cd82137c9eb86e0ac491982838102.xml/MD5E-s189075--975cd82137c9eb86e0ac491982838102.xml

BNU_1/sub-0025901/ses-2/label/catROIs_sub-0025901_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/W3/MD5E-s120079--51291ae7f7501521916744d11735e3a4.mat/MD5E-s120079--51291ae7f7501521916744d11735e3a4.mat

BNU_1/sub-0025901/ses-2/label/catROIs_sub-0025901_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/83/7w/MD5E-s332120--18ee397025db80386b80144e876d164a.xml/MD5E-s332120--18ee397025db80386b80144e876d164a.xml

BNU_1/sub-0025901/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025901/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5x/33/MD5E-s130207--06fe13bc55804d2a97c9d7d7626b7227.nii.gz/MD5E-s130207--06fe13bc55804d2a97c9d7d7626b7227.nii.gz

BNU_1/sub-0025901/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025901/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/10/MD5E-s146469--d146f4c5df3d137627623d37c0e3cc7a.nii.gz/MD5E-s146469--d146f4c5df3d137627623d37c0e3cc7a.nii.gz

BNU_1/sub-0025901/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025901/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/jM/MD5E-s198854--2f1dd9c3b949bdc1feee3f48fef40c5a.nii.gz/MD5E-s198854--2f1dd9c3b949bdc1feee3f48fef40c5a.nii.gz

BNU_1/sub-0025901/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025901/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6P/3f/MD5E-s221310--6eb30b7d9ce3bb2c7f74aa0c8395f057.nii.gz/MD5E-s221310--6eb30b7d9ce3bb2c7f74aa0c8395f057.nii.gz

BNU_1/sub-0025901/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025901/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/0Z/MD5E-s19635--9bf332cd00f8a452efc3775defbe18f3.nii.gz/MD5E-s19635--9bf332cd00f8a452efc3775defbe18f3.nii.gz

BNU_1/sub-0025901/ses-2/mri/aal3_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025901/ses-2/mri/aal3_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/Mq/MD5E-s148766--466509d5a70b6e3d23502dd7b69645f5.nii.gz/MD5E-s148766--466509d5a70b6e3d23502dd7b69645f5.nii.gz

BNU_1/sub-0025901/ses-2/mri/anatomy3_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025901/ses-2/mri/anatomy3_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/p5/MD5E-s106560--eb1b00f0b1470549b568ea186b552230.nii.gz/MD5E-s106560--eb1b00f0b1470549b568ea186b552230.nii.gz

BNU_1/sub-0025901/ses-2/mri/anon_misub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M4/8k/MD5E-s3199223--7b51caeec7d4bfded17e190b16bfaf14.nii.gz/MD5E-s3199223--7b51caeec7d4bfded17e190b16bfaf14.nii.gz

BNU_1/sub-0025901/ses-2/mri/anon_msub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/8G/MD5E-s6594701--f31cfcba60506af2312005ffc2af7a63.nii.gz/MD5E-s6594701--f31cfcba60506af2312005ffc2af7a63.nii.gz

BNU_1/sub-0025901/ses-2/mri/cat_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xW/g8/MD5E-s78748--a25f6d00a5089217252816998af7475a.nii.gz/MD5E-s78748--a25f6d00a5089217252816998af7475a.nii.gz

BNU_1/sub-0025901/ses-2/mri/cobra_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025901/ses-2/mri/cobra_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Z/Mj/MD5E-s39589--4f84d7d84905685904916d727927bfe6.nii.gz/MD5E-s39589--4f84d7d84905685904916d727927bfe6.nii.gz

BNU_1/sub-0025901/ses-2/mri/hammers_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025901/ses-2/mri/hammers_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/1V/MD5E-s119609--de754abba17d014805624b20fb5dc100.nii.gz/MD5E-s119609--de754abba17d014805624b20fb5dc100.nii.gz

BNU_1/sub-0025901/ses-2/mri/ibsr_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025901/ses-2/mri/ibsr_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/PF/MD5E-s125158--cd83337f190c568526ac5e6e8128d642.nii.gz/MD5E-s125158--cd83337f190c568526ac5e6e8128d642.nii.gz

BNU_1/sub-0025901/ses-2/mri/it_sub-0025901_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/g0/MD5E-s284--5a4e104fbb81b4e6eebed55c3bed8e67.mat/MD5E-s284--5a4e104fbb81b4e6eebed55c3bed8e67.mat

BNU_1/sub-0025901/ses-2/mri/it_sub-0025901_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/m0/MD5E-s285--b146f743e56ede9214966063b3b63718.mat/MD5E-s285--b146f743e56ede9214966063b3b63718.mat

BNU_1/sub-0025901/ses-2/mri/iy_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/Pz/MD5E-s28913457--d532d2141986d7f3062230ea03f2182c.nii.gz/MD5E-s28913457--d532d2141986d7f3062230ea03f2182c.nii.gz

BNU_1/sub-0025901/ses-2/mri/julichbrain_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025901/ses-2/mri/julichbrain_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/zm/MD5E-s158747--64f92438bf0b90a516c413f1f144be74.nii.gz/MD5E-s158747--64f92438bf0b90a516c413f1f144be74.nii.gz

BNU_1/sub-0025901/ses-2/mri/lpba40_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025901/ses-2/mri/lpba40_sub-0025901_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025901/ses-2/mri/m0wp1sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g3/xp/MD5E-s2586803--e1b8ac7fbf77672d14448827ae6789fb.nii.gz/MD5E-s2586803--e1b8ac7fbf77672d14448827ae6789fb.nii.gz

BNU_1/sub-0025901/ses-2/mri/m0wp2sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w2/kv/MD5E-s2254123--2af03f060324e0ee84f56f74f79c6024.nii.gz/MD5E-s2254123--2af03f060324e0ee84f56f74f79c6024.nii.gz

BNU_1/sub-0025901/ses-2/mri/m0wp3sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0p/7g/MD5E-s2389079--184cdce89c988bcf3c5999416fb01ac0.nii.gz/MD5E-s2389079--184cdce89c988bcf3c5999416fb01ac0.nii.gz

BNU_1/sub-0025901/ses-2/mri/mori_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025901/ses-2/mri/mori_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/8P/MD5E-s137036--210f39162af646373f9c983aa56cc659.nii.gz/MD5E-s137036--210f39162af646373f9c983aa56cc659.nii.gz

BNU_1/sub-0025901/ses-2/mri/mwp1sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/3W/MD5E-s2600317--4b21bbf630b0dfef6d5c0b1002717931.nii.gz/MD5E-s2600317--4b21bbf630b0dfef6d5c0b1002717931.nii.gz

BNU_1/sub-0025901/ses-2/mri/mwp2sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/v0/MD5E-s2260730--9891d45a3a7d588e71c25758e8680e8b.nii.gz/MD5E-s2260730--9891d45a3a7d588e71c25758e8680e8b.nii.gz

BNU_1/sub-0025901/ses-2/mri/mwp3sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025901/ses-2/mri/neuromorphometrics_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025901/ses-2/mri/neuromorphometrics_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025901/ses-2/mri/p0sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/mP/MD5E-s625529--79acc8429cbf7cf518598bf4f4b4087b.nii.gz/MD5E-s625529--79acc8429cbf7cf518598bf4f4b4087b.nii.gz

BNU_1/sub-0025901/ses-2/mri/p1sub-0025901_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025901/ses-2/mri/p2sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/Jv/MD5E-s443110--e5daf1da9c91eb162b517182dbf26a2a.nii.gz/MD5E-s443110--e5daf1da9c91eb162b517182dbf26a2a.nii.gz

BNU_1/sub-0025901/ses-2/mri/p3sub-0025901_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025901/ses-2/mri/rp1sub-0025901_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025901/ses-2/mri/rp2sub-0025901_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025901/ses-2/mri/rp3sub-0025901_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025901/ses-2/mri/t_sub-0025901_ses-2_run-1_T1w_affine_reorient.mat

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BNU_1/sub-0025901/ses-2/mri/t_sub-0025901_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025901/ses-2/mri/thalamus_sub-0025901_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025901/ses-2/mri/thalamus_sub-0025901_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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