[DATALAD RUNCMD] Compute MPG_1/sub-0027432/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MPG_1/sub-0027432/ses-1/anat/sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MPG_1/sub-0027432/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MPG_1/sub-0027432/ses-1/err/cat_main_amap.line273.cat_main_amap.nan/cat_sub-0027432_ses-1_acq-inv1phs_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../../.git/annex/objects/z0/77/MD5E-s8082--0c760943216c94902cebd401c43d9d88.xml/MD5E-s8082--0c760943216c94902cebd401c43d9d88.xml

MPG_1/sub-0027432/ses-1/err/cat_main_amap.line273.cat_main_amap.nan/sub-0027432_ses-1_acq-inv1phs_run-1_T1w.nii

@@ -1 +0,0 @@
-/var/lib/condor/execute/dir_1911969/ds/MPG_1/sub-0027432/ses-1/sub-0027432_ses-1_acq-inv1phs_run-1_T1w.nii

MPG_1/sub-0027432/ses-1/label/catROI_sub-0027432_ses-1_acq-inv2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wg/Mf/MD5E-s61196--d622be376d5bc07044cd432452ba8143.mat/MD5E-s61196--d622be376d5bc07044cd432452ba8143.mat

MPG_1/sub-0027432/ses-1/label/catROI_sub-0027432_ses-1_acq-inv2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/pZ/MD5E-s189181--a4b86afa7ea19a3d0d30cac498e18d1b.xml/MD5E-s189181--a4b86afa7ea19a3d0d30cac498e18d1b.xml

MPG_1/sub-0027432/ses-1/label/catROIs_sub-0027432_ses-1_acq-inv2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gj/w2/MD5E-s121304--d03dae575ffb264110d3d8d3a18771b9.mat/MD5E-s121304--d03dae575ffb264110d3d8d3a18771b9.mat

MPG_1/sub-0027432/ses-1/label/catROIs_sub-0027432_ses-1_acq-inv2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V7/VW/MD5E-s333194--b8c3304067e6f0556786cf078d148a43.xml/MD5E-s333194--b8c3304067e6f0556786cf078d148a43.xml

MPG_1/sub-0027432/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MPG_1/sub-0027432/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/fw/MD5E-s364216--13b640e1e6b40ed46a9773f48901af4d.nii.gz/MD5E-s364216--13b640e1e6b40ed46a9773f48901af4d.nii.gz

MPG_1/sub-0027432/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MPG_1/sub-0027432/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/vF/MD5E-s404718--4d82997a3b398fe25b15d7a02a9c1d9c.nii.gz/MD5E-s404718--4d82997a3b398fe25b15d7a02a9c1d9c.nii.gz

MPG_1/sub-0027432/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MPG_1/sub-0027432/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z1/1j/MD5E-s514012--6eeaece980f0c3136dda5c60b254c614.nii.gz/MD5E-s514012--6eeaece980f0c3136dda5c60b254c614.nii.gz

MPG_1/sub-0027432/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MPG_1/sub-0027432/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/P8/MD5E-s565684--8e1bc687cca0ce25b6f23a92dc12290d.nii.gz/MD5E-s565684--8e1bc687cca0ce25b6f23a92dc12290d.nii.gz

MPG_1/sub-0027432/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MPG_1/sub-0027432/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mg/F2/MD5E-s51485--eb3d5121445acd0e14a295a889696935.nii.gz/MD5E-s51485--eb3d5121445acd0e14a295a889696935.nii.gz

MPG_1/sub-0027432/ses-1/mri/aal3_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MPG_1/sub-0027432/ses-1/mri/aal3_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GW/w0/MD5E-s404936--5b0cb784e0338b9bebc8d75c3e3abb54.nii.gz/MD5E-s404936--5b0cb784e0338b9bebc8d75c3e3abb54.nii.gz

MPG_1/sub-0027432/ses-1/mri/anatomy3_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MPG_1/sub-0027432/ses-1/mri/anatomy3_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/4p/MD5E-s289354--9ac6c7b05db71e801fa08cfb2e83f148.nii.gz/MD5E-s289354--9ac6c7b05db71e801fa08cfb2e83f148.nii.gz

MPG_1/sub-0027432/ses-1/mri/anon_misub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/61/MD5E-s25146895--28306de920ce8c2c27e72d53e3847106.nii.gz/MD5E-s25146895--28306de920ce8c2c27e72d53e3847106.nii.gz

MPG_1/sub-0027432/ses-1/mri/anon_msub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/Mm/MD5E-s23787121--ba936000b49f3a88b05a3a441b6de802.nii.gz/MD5E-s23787121--ba936000b49f3a88b05a3a441b6de802.nii.gz

MPG_1/sub-0027432/ses-1/mri/cat_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/mQ/MD5E-s171745--b9de510c37c9c084918073acd4d0371c.nii.gz/MD5E-s171745--b9de510c37c9c084918073acd4d0371c.nii.gz

MPG_1/sub-0027432/ses-1/mri/cobra_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MPG_1/sub-0027432/ses-1/mri/cobra_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8X/v7/MD5E-s99101--461006321f34d25d7eb8a5375de3d875.nii.gz/MD5E-s99101--461006321f34d25d7eb8a5375de3d875.nii.gz

MPG_1/sub-0027432/ses-1/mri/hammers_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MPG_1/sub-0027432/ses-1/mri/hammers_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/12/5z/MD5E-s308905--4021a44bedc940c57c62a19de1da7cb7.nii.gz/MD5E-s308905--4021a44bedc940c57c62a19de1da7cb7.nii.gz

MPG_1/sub-0027432/ses-1/mri/ibsr_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MPG_1/sub-0027432/ses-1/mri/ibsr_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/Mx/MD5E-s338413--1e4387414b4c6c797a32189421fa7e77.nii.gz/MD5E-s338413--1e4387414b4c6c797a32189421fa7e77.nii.gz

MPG_1/sub-0027432/ses-1/mri/it_sub-0027432_ses-1_acq-inv2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vm/M7/MD5E-s282--359d25892788092e71cb2e1a07529b27.mat/MD5E-s282--359d25892788092e71cb2e1a07529b27.mat

MPG_1/sub-0027432/ses-1/mri/it_sub-0027432_ses-1_acq-inv2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/Jk/MD5E-s283--6ca79513b6b5681bbf0e65cabb79a402.mat/MD5E-s283--6ca79513b6b5681bbf0e65cabb79a402.mat

MPG_1/sub-0027432/ses-1/mri/iy_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/00/MD5E-s133424159--c8499ca217ef6b45f524669375d7a43c.nii.gz/MD5E-s133424159--c8499ca217ef6b45f524669375d7a43c.nii.gz

MPG_1/sub-0027432/ses-1/mri/julichbrain_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MPG_1/sub-0027432/ses-1/mri/julichbrain_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/28/MD5E-s434850--0539acb01660adf81d489cc72a999f04.nii.gz/MD5E-s434850--0539acb01660adf81d489cc72a999f04.nii.gz

MPG_1/sub-0027432/ses-1/mri/lpba40_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MPG_1/sub-0027432/ses-1/mri/lpba40_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/6M/MD5E-s308518--8ec1d9b5ff14f0a84e311def6ddbae6d.nii.gz/MD5E-s308518--8ec1d9b5ff14f0a84e311def6ddbae6d.nii.gz

MPG_1/sub-0027432/ses-1/mri/m0wp1sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/8k/MD5E-s2437231--5f57daa1f829983c8b7412a78b04b622.nii.gz/MD5E-s2437231--5f57daa1f829983c8b7412a78b04b622.nii.gz

MPG_1/sub-0027432/ses-1/mri/m0wp2sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6J/Fz/MD5E-s2317618--a2e84d5471b1bd8627d7266086d4648a.nii.gz/MD5E-s2317618--a2e84d5471b1bd8627d7266086d4648a.nii.gz

MPG_1/sub-0027432/ses-1/mri/m0wp3sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/VQ/MD5E-s2203549--6893d69d6806c122de1aa916955ae4c8.nii.gz/MD5E-s2203549--6893d69d6806c122de1aa916955ae4c8.nii.gz

MPG_1/sub-0027432/ses-1/mri/mori_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MPG_1/sub-0027432/ses-1/mri/mori_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/zJ/MD5E-s371217--0039ed365754715e874b15c8d6e63de5.nii.gz/MD5E-s371217--0039ed365754715e874b15c8d6e63de5.nii.gz

MPG_1/sub-0027432/ses-1/mri/mwp1sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/3q/MD5E-s2436658--888b493920853f9ca95b29681c51023c.nii.gz/MD5E-s2436658--888b493920853f9ca95b29681c51023c.nii.gz

MPG_1/sub-0027432/ses-1/mri/mwp2sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0W/10/MD5E-s2321674--39f60495d6f976cc17dc7f9b6ff88008.nii.gz/MD5E-s2321674--39f60495d6f976cc17dc7f9b6ff88008.nii.gz

MPG_1/sub-0027432/ses-1/mri/mwp3sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5j/kz/MD5E-s2203320--2cf2cf072d0900733574196bf33227b8.nii.gz/MD5E-s2203320--2cf2cf072d0900733574196bf33227b8.nii.gz

MPG_1/sub-0027432/ses-1/mri/neuromorphometrics_sub-0027432_ses-1_acq-inv2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

MPG_1/sub-0027432/ses-1/mri/neuromorphometrics_sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m5/2V/MD5E-s413992--d17de9515f4642b974ca01b57e871f15.nii.gz/MD5E-s413992--d17de9515f4642b974ca01b57e871f15.nii.gz

MPG_1/sub-0027432/ses-1/mri/p0sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/PQ/MD5E-s1324496--b3ed98d6c0b231721ecde7a3adc91a78.nii.gz/MD5E-s1324496--b3ed98d6c0b231721ecde7a3adc91a78.nii.gz

MPG_1/sub-0027432/ses-1/mri/p1sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027432/ses-1/mri/p2sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027432/ses-1/mri/p3sub-0027432_ses-1_acq-inv2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/7G/MD5E-s615792--fcf423e1a48323f5e50258903aefcff2.nii.gz/MD5E-s615792--fcf423e1a48323f5e50258903aefcff2.nii.gz

MPG_1/sub-0027432/ses-1/mri/rp1sub-0027432_ses-1_acq-inv2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3J/Xg/MD5E-s305884--2335b22664c56875a822dee2f4b54607.nii.gz/MD5E-s305884--2335b22664c56875a822dee2f4b54607.nii.gz

MPG_1/sub-0027432/ses-1/mri/rp2sub-0027432_ses-1_acq-inv2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/F7/MD5E-s265005--0b813458f5c5d4dd98c15bfb609b2fb9.nii.gz/MD5E-s265005--0b813458f5c5d4dd98c15bfb609b2fb9.nii.gz

MPG_1/sub-0027432/ses-1/mri/rp3sub-0027432_ses-1_acq-inv2_run-1_T1w_affine.nii.gz

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