[DATALAD RUNCMD] Compute BMB_1/sub-0003059/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003059/ses-1/anat/sub-0003059_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003059/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003059/ses-1/label/catROI_sub-0003059_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/Kx/MD5E-s57977--d296690446c049a57cdeea6c6b048da9.mat/MD5E-s57977--d296690446c049a57cdeea6c6b048da9.mat

BMB_1/sub-0003059/ses-1/label/catROI_sub-0003059_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/P0/MD5E-s188870--97c4842d47dcc5971f1ffd65582b688d.xml/MD5E-s188870--97c4842d47dcc5971f1ffd65582b688d.xml

BMB_1/sub-0003059/ses-1/label/catROIs_sub-0003059_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/7J/MD5E-s120060--1c222d07b57ad88c1ddc43e9c285cbce.mat/MD5E-s120060--1c222d07b57ad88c1ddc43e9c285cbce.mat

BMB_1/sub-0003059/ses-1/label/catROIs_sub-0003059_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xw/z3/MD5E-s332219--dc5b7108ccf89e326846a6a0b8fc71d0.xml/MD5E-s332219--dc5b7108ccf89e326846a6a0b8fc71d0.xml

BMB_1/sub-0003059/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003059/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/W5/MD5E-s169105--3df68ccbf00ba593bd59e79509784aa5.nii.gz/MD5E-s169105--3df68ccbf00ba593bd59e79509784aa5.nii.gz

BMB_1/sub-0003059/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003059/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/F4/MD5E-s189127--9d72deb90bccc88037bc0a7291ccfdd6.nii.gz/MD5E-s189127--9d72deb90bccc88037bc0a7291ccfdd6.nii.gz

BMB_1/sub-0003059/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003059/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/GQ/MD5E-s255707--5f22c1abf88f18069092fbf3c7e2e2d5.nii.gz/MD5E-s255707--5f22c1abf88f18069092fbf3c7e2e2d5.nii.gz

BMB_1/sub-0003059/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003059/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P7/05/MD5E-s284797--030dda89c6c28c02926caf4a4e9d521a.nii.gz/MD5E-s284797--030dda89c6c28c02926caf4a4e9d521a.nii.gz

BMB_1/sub-0003059/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003059/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4J/82/MD5E-s24576--138f0f332dde00d22bf5a247474aff26.nii.gz/MD5E-s24576--138f0f332dde00d22bf5a247474aff26.nii.gz

BMB_1/sub-0003059/ses-1/mri/aal3_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003059/ses-1/mri/aal3_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/7Q/MD5E-s191625--4560d328daba4c152aeccb0d2b74e18f.nii.gz/MD5E-s191625--4560d328daba4c152aeccb0d2b74e18f.nii.gz

BMB_1/sub-0003059/ses-1/mri/anatomy3_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003059/ses-1/mri/anatomy3_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zm/3W/MD5E-s139292--880ca7a6987d2ef01c679c58c6ed5e7a.nii.gz/MD5E-s139292--880ca7a6987d2ef01c679c58c6ed5e7a.nii.gz

BMB_1/sub-0003059/ses-1/mri/anon_misub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x2/6x/MD5E-s6002120--bac6c05aa7b16aa55da602f5d6bffe8d.nii.gz/MD5E-s6002120--bac6c05aa7b16aa55da602f5d6bffe8d.nii.gz

BMB_1/sub-0003059/ses-1/mri/anon_msub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7X/6f/MD5E-s12380945--a7e03ce0519ea1c312702c8dda5c2690.nii.gz/MD5E-s12380945--a7e03ce0519ea1c312702c8dda5c2690.nii.gz

BMB_1/sub-0003059/ses-1/mri/cat_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/0j/MD5E-s104403--4f57c65b9697bc0c7f335d1e99d42a89.nii.gz/MD5E-s104403--4f57c65b9697bc0c7f335d1e99d42a89.nii.gz

BMB_1/sub-0003059/ses-1/mri/cobra_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003059/ses-1/mri/cobra_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0F/wk/MD5E-s50591--e79add664fcc3799940c495aa2f327ae.nii.gz/MD5E-s50591--e79add664fcc3799940c495aa2f327ae.nii.gz

BMB_1/sub-0003059/ses-1/mri/hammers_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003059/ses-1/mri/hammers_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/Z2/MD5E-s151416--58bad42da35c6d95aae44dfa0f985aa9.nii.gz/MD5E-s151416--58bad42da35c6d95aae44dfa0f985aa9.nii.gz

BMB_1/sub-0003059/ses-1/mri/ibsr_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003059/ses-1/mri/ibsr_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/V6/MD5E-s159657--ecd2a399cf774cba3569951d922f4b9f.nii.gz/MD5E-s159657--ecd2a399cf774cba3569951d922f4b9f.nii.gz

BMB_1/sub-0003059/ses-1/mri/it_sub-0003059_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/Qj/MD5E-s283--e808fed4867824090760509478397c14.mat/MD5E-s283--e808fed4867824090760509478397c14.mat

BMB_1/sub-0003059/ses-1/mri/it_sub-0003059_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/Jk/MD5E-s283--7e42ada06c505415fd63e0b37706fcc1.mat/MD5E-s283--7e42ada06c505415fd63e0b37706fcc1.mat

BMB_1/sub-0003059/ses-1/mri/iy_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/1G/MD5E-s49205889--cdadbb1a9e487d69bf62cb9c9ec1946e.nii.gz/MD5E-s49205889--cdadbb1a9e487d69bf62cb9c9ec1946e.nii.gz

BMB_1/sub-0003059/ses-1/mri/julichbrain_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003059/ses-1/mri/julichbrain_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kK/9X/MD5E-s203951--9e1ce997158d2c0f92445b044a5f793d.nii.gz/MD5E-s203951--9e1ce997158d2c0f92445b044a5f793d.nii.gz

BMB_1/sub-0003059/ses-1/mri/lpba40_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003059/ses-1/mri/lpba40_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/67/MD5E-s147925--ae40d47d0df0e61a5262e095c26e44a4.nii.gz/MD5E-s147925--ae40d47d0df0e61a5262e095c26e44a4.nii.gz

BMB_1/sub-0003059/ses-1/mri/m0wp1sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/6K/MD5E-s2560135--14366e3bfcc6f439781cd93abe025681.nii.gz/MD5E-s2560135--14366e3bfcc6f439781cd93abe025681.nii.gz

BMB_1/sub-0003059/ses-1/mri/m0wp2sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/7p/MD5E-s2287595--16669f020d8805a9d6a252205a50da47.nii.gz/MD5E-s2287595--16669f020d8805a9d6a252205a50da47.nii.gz

BMB_1/sub-0003059/ses-1/mri/m0wp3sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/v6/MD5E-s2499042--77cccbcc9ea12c715e1d70fa0ae7c8ec.nii.gz/MD5E-s2499042--77cccbcc9ea12c715e1d70fa0ae7c8ec.nii.gz

BMB_1/sub-0003059/ses-1/mri/mori_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003059/ses-1/mri/mori_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/3m/MD5E-s176851--2fa48402e1ccb3732dec94b463f963aa.nii.gz/MD5E-s176851--2fa48402e1ccb3732dec94b463f963aa.nii.gz

BMB_1/sub-0003059/ses-1/mri/mwp1sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/gq/MD5E-s2560958--62e9109be998fb4f723a06388f7afcfe.nii.gz/MD5E-s2560958--62e9109be998fb4f723a06388f7afcfe.nii.gz

BMB_1/sub-0003059/ses-1/mri/mwp2sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/x5/MD5E-s2284171--343a36291501fe516cd9538cd6dbff44.nii.gz/MD5E-s2284171--343a36291501fe516cd9538cd6dbff44.nii.gz

BMB_1/sub-0003059/ses-1/mri/mwp3sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/vV/MD5E-s2495368--a43869d33f5ff1703927587cc83cb77b.nii.gz/MD5E-s2495368--a43869d33f5ff1703927587cc83cb77b.nii.gz

BMB_1/sub-0003059/ses-1/mri/neuromorphometrics_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003059/ses-1/mri/neuromorphometrics_sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g7/26/MD5E-s205829--c9f35863fbdb7c2851ed5c3d6e9ee59d.nii.gz/MD5E-s205829--c9f35863fbdb7c2851ed5c3d6e9ee59d.nii.gz

BMB_1/sub-0003059/ses-1/mri/p0sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/2v/MD5E-s635066--08e2b7ab8a081f4d344b67ef72e0f5b2.nii.gz/MD5E-s635066--08e2b7ab8a081f4d344b67ef72e0f5b2.nii.gz

BMB_1/sub-0003059/ses-1/mri/p1sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Km/PG/MD5E-s667392--f3320842fe18465a7a7dd93eac593b57.nii.gz/MD5E-s667392--f3320842fe18465a7a7dd93eac593b57.nii.gz

BMB_1/sub-0003059/ses-1/mri/p2sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/9Z/MD5E-s439922--be6527ea372dffd5e6fb982a64c8d4c4.nii.gz/MD5E-s439922--be6527ea372dffd5e6fb982a64c8d4c4.nii.gz

BMB_1/sub-0003059/ses-1/mri/p3sub-0003059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gW/K3/MD5E-s394284--d9f3d98ac0f2cc010b645756b8a5ad0d.nii.gz/MD5E-s394284--d9f3d98ac0f2cc010b645756b8a5ad0d.nii.gz

BMB_1/sub-0003059/ses-1/mri/rp1sub-0003059_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0J/7w/MD5E-s420760--a1c19c97235aebfc15395960d2d65111.nii.gz/MD5E-s420760--a1c19c97235aebfc15395960d2d65111.nii.gz

BMB_1/sub-0003059/ses-1/mri/rp2sub-0003059_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/xX/MD5E-s288096--9f2b9a79359bfd0e5a35c2c84f6b7d37.nii.gz/MD5E-s288096--9f2b9a79359bfd0e5a35c2c84f6b7d37.nii.gz

BMB_1/sub-0003059/ses-1/mri/rp3sub-0003059_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/Fx/MD5E-s271536--56319afed70084e9d72ce691ff746e01.nii.gz/MD5E-s271536--56319afed70084e9d72ce691ff746e01.nii.gz

BMB_1/sub-0003059/ses-1/mri/t_sub-0003059_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p2/kj/MD5E-s284--a7f4b3d89f2e39d73f3646ea05fbadef.mat/MD5E-s284--a7f4b3d89f2e39d73f3646ea05fbadef.mat

BMB_1/sub-0003059/ses-1/mri/t_sub-0003059_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/19/0w/MD5E-s283--18d42e2995594db109e7b083265cb34c.mat/MD5E-s283--18d42e2995594db109e7b083265cb34c.mat

BMB_1/sub-0003059/ses-1/mri/thalamus_sub-0003059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003059/ses-1/mri/thalamus_sub-0003059_ses-1_run-1_T1w.nii.gz

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