[DATALAD RUNCMD] Compute Utah_1/sub-0026020/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/Utah_1/sub-0026020/ses-1/anat/sub-0026020_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "Utah_1/sub-0026020/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Utah_1/sub-0026020/ses-1/label/catROI_sub-0026020_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZQ/FM/MD5E-s61413--e37efe5e3028c3789c72291cd2c1365f.mat/MD5E-s61413--e37efe5e3028c3789c72291cd2c1365f.mat

Utah_1/sub-0026020/ses-1/label/catROI_sub-0026020_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/GJ/MD5E-s188809--6bdc08fb6d8be1dcb425172ef8ccc1fe.xml/MD5E-s188809--6bdc08fb6d8be1dcb425172ef8ccc1fe.xml

Utah_1/sub-0026020/ses-1/label/catROIs_sub-0026020_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VZ/5W/MD5E-s120016--648095717274fc8db2997b9b958547e9.mat/MD5E-s120016--648095717274fc8db2997b9b958547e9.mat

Utah_1/sub-0026020/ses-1/label/catROIs_sub-0026020_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/9j/MD5E-s332165--a64946c563353283735884db1b7f5c40.xml/MD5E-s332165--a64946c563353283735884db1b7f5c40.xml

Utah_1/sub-0026020/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Utah_1/sub-0026020/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026020_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4z/Mx/MD5E-s413373--60e15d004f1ce8d9aa1d8a6cd21e038c.nii.gz/MD5E-s413373--60e15d004f1ce8d9aa1d8a6cd21e038c.nii.gz

Utah_1/sub-0026020/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Utah_1/sub-0026020/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026020_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1x/M9/MD5E-s458730--87bc4e6c5d1423c55f79c0dc24934288.nii.gz/MD5E-s458730--87bc4e6c5d1423c55f79c0dc24934288.nii.gz

Utah_1/sub-0026020/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Utah_1/sub-0026020/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026020_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/KG/MD5E-s657519--04f9452f0e9be5adaa0e7f553ffaa87d.nii.gz/MD5E-s657519--04f9452f0e9be5adaa0e7f553ffaa87d.nii.gz

Utah_1/sub-0026020/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Utah_1/sub-0026020/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026020_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/w7/MD5E-s722660--42f9733e80205afcfdeb339fddad4ecb.nii.gz/MD5E-s722660--42f9733e80205afcfdeb339fddad4ecb.nii.gz

Utah_1/sub-0026020/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Utah_1/sub-0026020/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026020_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V8/kp/MD5E-s67992--59e83336a9f794a472a7409933690ab8.nii.gz/MD5E-s67992--59e83336a9f794a472a7409933690ab8.nii.gz

Utah_1/sub-0026020/ses-1/mri/aal3_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Utah_1/sub-0026020/ses-1/mri/aal3_sub-0026020_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mg/5Z/MD5E-s458324--24b33f866ba771a1a2adbcd144fdb507.nii.gz/MD5E-s458324--24b33f866ba771a1a2adbcd144fdb507.nii.gz

Utah_1/sub-0026020/ses-1/mri/anatomy3_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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Utah_1/sub-0026020/ses-1/mri/anatomy3_sub-0026020_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wM/29/MD5E-s342530--ccd6834d5f15661662e44efdabfc30a3.nii.gz/MD5E-s342530--ccd6834d5f15661662e44efdabfc30a3.nii.gz

Utah_1/sub-0026020/ses-1/mri/anon_misub-0026020_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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Utah_1/sub-0026020/ses-1/mri/anon_msub-0026020_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/VQ/MD5E-s34314307--6e9121f51b76423d6fa957312c9c5302.nii.gz/MD5E-s34314307--6e9121f51b76423d6fa957312c9c5302.nii.gz

Utah_1/sub-0026020/ses-1/mri/cat_sub-0026020_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/98/5X/MD5E-s266841--0b77ebd83714bf843aef82e5f57361e9.nii.gz/MD5E-s266841--0b77ebd83714bf843aef82e5f57361e9.nii.gz

Utah_1/sub-0026020/ses-1/mri/cobra_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Utah_1/sub-0026020/ses-1/mri/cobra_sub-0026020_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/6q/2k/MD5E-s124921--83ec823a3304366339f82897fe68ba32.nii.gz/MD5E-s124921--83ec823a3304366339f82897fe68ba32.nii.gz

Utah_1/sub-0026020/ses-1/mri/hammers_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Utah_1/sub-0026020/ses-1/mri/hammers_sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/ibsr_sub-0026020_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Utah_1/sub-0026020/ses-1/mri/ibsr_sub-0026020_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/8m/KX/MD5E-s391567--698f64b97c0ae03e5a6384d3bf389a8e.nii.gz/MD5E-s391567--698f64b97c0ae03e5a6384d3bf389a8e.nii.gz

Utah_1/sub-0026020/ses-1/mri/it_sub-0026020_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/F7/MD5E-s281--6ebcc0247105ee81881ccd4d528f0e51.mat/MD5E-s281--6ebcc0247105ee81881ccd4d528f0e51.mat

Utah_1/sub-0026020/ses-1/mri/it_sub-0026020_ses-1_run-1_T1w_rigid_reorient.mat

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+../../../../.git/annex/objects/0F/Kw/MD5E-s282--dfb6776c0a3de0043cbdb4e60dd35fa7.mat/MD5E-s282--dfb6776c0a3de0043cbdb4e60dd35fa7.mat

Utah_1/sub-0026020/ses-1/mri/iy_sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/julichbrain_sub-0026020_ses-1_run-1_T1w.csv

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Utah_1/sub-0026020/ses-1/mri/julichbrain_sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/lpba40_sub-0026020_ses-1_run-1_T1w.csv

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Utah_1/sub-0026020/ses-1/mri/lpba40_sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/m0wp1sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/m0wp2sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/m0wp3sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/mori_sub-0026020_ses-1_run-1_T1w.csv

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Utah_1/sub-0026020/ses-1/mri/mori_sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/mwp1sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/mwp2sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/mwp3sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/neuromorphometrics_sub-0026020_ses-1_run-1_T1w.csv

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Utah_1/sub-0026020/ses-1/mri/neuromorphometrics_sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/p0sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/p1sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/p2sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/p3sub-0026020_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026020/ses-1/mri/rp1sub-0026020_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026020/ses-1/mri/rp2sub-0026020_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026020/ses-1/mri/rp3sub-0026020_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026020/ses-1/mri/t_sub-0026020_ses-1_run-1_T1w_affine_reorient.mat

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Utah_1/sub-0026020/ses-1/mri/t_sub-0026020_ses-1_run-1_T1w_rigid_reorient.mat

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Utah_1/sub-0026020/ses-1/mri/thalamus_sub-0026020_ses-1_run-1_T1w.csv

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Utah_1/sub-0026020/ses-1/mri/thalamus_sub-0026020_ses-1_run-1_T1w.nii.gz

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