[DATALAD RUNCMD] Compute BNU_1/sub-0025897/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025897/ses-2/anat/sub-0025897_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025897/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025897/ses-2/label/catROI_sub-0025897_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VX/FP/MD5E-s61221--b76c5afdbdec1c4613913288dc05c7bd.mat/MD5E-s61221--b76c5afdbdec1c4613913288dc05c7bd.mat

BNU_1/sub-0025897/ses-2/label/catROI_sub-0025897_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/5W/MD5E-s189104--8d91f83b7dde7831789e7ebb4da99a5d.xml/MD5E-s189104--8d91f83b7dde7831789e7ebb4da99a5d.xml

BNU_1/sub-0025897/ses-2/label/catROIs_sub-0025897_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wk/k6/MD5E-s120061--3bf01973e0eb73c2db39736192d4da34.mat/MD5E-s120061--3bf01973e0eb73c2db39736192d4da34.mat

BNU_1/sub-0025897/ses-2/label/catROIs_sub-0025897_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5W/XJ/MD5E-s332101--8adea7d200913d377f7f75297c8f260c.xml/MD5E-s332101--8adea7d200913d377f7f75297c8f260c.xml

BNU_1/sub-0025897/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025897/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f9/wK/MD5E-s130544--bb25454b6cf7e6c457e9af98479ca719.nii.gz/MD5E-s130544--bb25454b6cf7e6c457e9af98479ca719.nii.gz

BNU_1/sub-0025897/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025897/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/x8/MD5E-s146901--9791fc9f74c4d47fde37fcaa5590aef6.nii.gz/MD5E-s146901--9791fc9f74c4d47fde37fcaa5590aef6.nii.gz

BNU_1/sub-0025897/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025897/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gG/25/MD5E-s199619--8618456a565635a4be87b0dd9f812709.nii.gz/MD5E-s199619--8618456a565635a4be87b0dd9f812709.nii.gz

BNU_1/sub-0025897/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025897/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/1J/MD5E-s221611--2fdec056598abf81aef02ecefe1b2745.nii.gz/MD5E-s221611--2fdec056598abf81aef02ecefe1b2745.nii.gz

BNU_1/sub-0025897/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025897/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mP/km/MD5E-s19451--624a8e0ba120b78122e3982c6e540d74.nii.gz/MD5E-s19451--624a8e0ba120b78122e3982c6e540d74.nii.gz

BNU_1/sub-0025897/ses-2/mri/aal3_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025897/ses-2/mri/aal3_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/9w/MD5E-s147126--0567c8beee27743005bf3bf31fd4c219.nii.gz/MD5E-s147126--0567c8beee27743005bf3bf31fd4c219.nii.gz

BNU_1/sub-0025897/ses-2/mri/anatomy3_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025897/ses-2/mri/anatomy3_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/4J/MD5E-s107050--0903f3532c8bb40b01194b645366b6c8.nii.gz/MD5E-s107050--0903f3532c8bb40b01194b645366b6c8.nii.gz

BNU_1/sub-0025897/ses-2/mri/anon_misub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/82/MD5E-s3290720--20804cc203253b431b19c330f9fac7be.nii.gz/MD5E-s3290720--20804cc203253b431b19c330f9fac7be.nii.gz

BNU_1/sub-0025897/ses-2/mri/anon_msub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/3M/MD5E-s6635081--673f77479a624dadb20f8ec3f78b9b59.nii.gz/MD5E-s6635081--673f77479a624dadb20f8ec3f78b9b59.nii.gz

BNU_1/sub-0025897/ses-2/mri/cat_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q2/11/MD5E-s79299--0818b47ab76a8fec49c279aae76c500c.nii.gz/MD5E-s79299--0818b47ab76a8fec49c279aae76c500c.nii.gz

BNU_1/sub-0025897/ses-2/mri/cobra_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025897/ses-2/mri/cobra_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/Q0/MD5E-s38882--c4d97cd5235425cbc2bdb62839ca72d0.nii.gz/MD5E-s38882--c4d97cd5235425cbc2bdb62839ca72d0.nii.gz

BNU_1/sub-0025897/ses-2/mri/hammers_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025897/ses-2/mri/hammers_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/6M/MD5E-s119413--1ae8bee9db92ab903f84a67e3db09511.nii.gz/MD5E-s119413--1ae8bee9db92ab903f84a67e3db09511.nii.gz

BNU_1/sub-0025897/ses-2/mri/ibsr_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025897/ses-2/mri/ibsr_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/G7/MD5E-s123464--15e64d685be107a5a662ae64c36afab4.nii.gz/MD5E-s123464--15e64d685be107a5a662ae64c36afab4.nii.gz

BNU_1/sub-0025897/ses-2/mri/it_sub-0025897_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/Z1/MD5E-s283--ee01493456e10d8fc8ff93e65d309809.mat/MD5E-s283--ee01493456e10d8fc8ff93e65d309809.mat

BNU_1/sub-0025897/ses-2/mri/it_sub-0025897_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/zV/MD5E-s284--15439ad74101b393f1213fc4a3e8dfa9.mat/MD5E-s284--15439ad74101b393f1213fc4a3e8dfa9.mat

BNU_1/sub-0025897/ses-2/mri/iy_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/qf/MD5E-s28638483--79d9cf29549806cf44cde723fa3c86a7.nii.gz/MD5E-s28638483--79d9cf29549806cf44cde723fa3c86a7.nii.gz

BNU_1/sub-0025897/ses-2/mri/julichbrain_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025897/ses-2/mri/julichbrain_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5P/0m/MD5E-s159075--81214bd9868242408c2171319a17cb29.nii.gz/MD5E-s159075--81214bd9868242408c2171319a17cb29.nii.gz

BNU_1/sub-0025897/ses-2/mri/lpba40_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025897/ses-2/mri/lpba40_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/XV/MD5E-s116054--261b502edfd8f94ef80f41c70454b21f.nii.gz/MD5E-s116054--261b502edfd8f94ef80f41c70454b21f.nii.gz

BNU_1/sub-0025897/ses-2/mri/m0wp1sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/2w/MD5E-s2597316--cd9e9b20e62f2c2e98d8745da44d48eb.nii.gz/MD5E-s2597316--cd9e9b20e62f2c2e98d8745da44d48eb.nii.gz

BNU_1/sub-0025897/ses-2/mri/m0wp2sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xq/Vx/MD5E-s2279811--c0babc9ff3517bbe1a93f471b8a2b7ad.nii.gz/MD5E-s2279811--c0babc9ff3517bbe1a93f471b8a2b7ad.nii.gz

BNU_1/sub-0025897/ses-2/mri/m0wp3sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/65/gz/MD5E-s2462856--d09c816ee0d4384a9440f92d3053874f.nii.gz/MD5E-s2462856--d09c816ee0d4384a9440f92d3053874f.nii.gz

BNU_1/sub-0025897/ses-2/mri/mori_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025897/ses-2/mri/mori_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/8j/MD5E-s136753--12cd0b9931d2312cde331afd9ebe9abf.nii.gz/MD5E-s136753--12cd0b9931d2312cde331afd9ebe9abf.nii.gz

BNU_1/sub-0025897/ses-2/mri/mwp1sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/Xw/MD5E-s2609760--4a1c99dfef7935e2e6d8fea9f65702d8.nii.gz/MD5E-s2609760--4a1c99dfef7935e2e6d8fea9f65702d8.nii.gz

BNU_1/sub-0025897/ses-2/mri/mwp2sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g5/Pq/MD5E-s2286445--ab5ccb62cd974ab4dfd79145bcf59b52.nii.gz/MD5E-s2286445--ab5ccb62cd974ab4dfd79145bcf59b52.nii.gz

BNU_1/sub-0025897/ses-2/mri/mwp3sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/1M/MD5E-s2461268--32d927f4f548e35fb6d283f80f7cc0b8.nii.gz/MD5E-s2461268--32d927f4f548e35fb6d283f80f7cc0b8.nii.gz

BNU_1/sub-0025897/ses-2/mri/neuromorphometrics_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025897/ses-2/mri/neuromorphometrics_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/P5/MD5E-s160411--337ac1cab095b2436bef61a661ed24a2.nii.gz/MD5E-s160411--337ac1cab095b2436bef61a661ed24a2.nii.gz

BNU_1/sub-0025897/ses-2/mri/p0sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/XP/MD5E-s653303--300d574d630085aacbeaec930076909f.nii.gz/MD5E-s653303--300d574d630085aacbeaec930076909f.nii.gz

BNU_1/sub-0025897/ses-2/mri/p1sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/x8/MD5E-s667636--a264ff59f82d7a82e8e7b04f9aadab8b.nii.gz/MD5E-s667636--a264ff59f82d7a82e8e7b04f9aadab8b.nii.gz

BNU_1/sub-0025897/ses-2/mri/p2sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/q9/MD5E-s461648--7d3795964f56fcec23bb81ae1966d984.nii.gz/MD5E-s461648--7d3795964f56fcec23bb81ae1966d984.nii.gz

BNU_1/sub-0025897/ses-2/mri/p3sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/xW/MD5E-s399883--d130a7c6ec3b568a1e5079f8581737dd.nii.gz/MD5E-s399883--d130a7c6ec3b568a1e5079f8581737dd.nii.gz

BNU_1/sub-0025897/ses-2/mri/rp1sub-0025897_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/mK/MD5E-s463790--5fbaaebf728da5dcb7aa4eea04d517a1.nii.gz/MD5E-s463790--5fbaaebf728da5dcb7aa4eea04d517a1.nii.gz

BNU_1/sub-0025897/ses-2/mri/rp2sub-0025897_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025897/ses-2/mri/rp3sub-0025897_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025897/ses-2/mri/t_sub-0025897_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xq/zW/MD5E-s284--1b9b2adca53da9b3caec1815cd513d53.mat/MD5E-s284--1b9b2adca53da9b3caec1815cd513d53.mat

BNU_1/sub-0025897/ses-2/mri/t_sub-0025897_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/17/wJ/MD5E-s284--e5f900fa1c346404650e3b14b3aacfb4.mat/MD5E-s284--e5f900fa1c346404650e3b14b3aacfb4.mat

BNU_1/sub-0025897/ses-2/mri/thalamus_sub-0025897_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025897/ses-2/mri/thalamus_sub-0025897_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mp/3p/MD5E-s13104--3f7a23f03ca9d3fb7df0bb6046b0d11c.nii.gz/MD5E-s13104--3f7a23f03ca9d3fb7df0bb6046b0d11c.nii.gz

BNU_1/sub-0025897/ses-2/mri/wj_sub-0025897_ses-2_run-1_T1w.nii.gz

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