[DATALAD RUNCMD] Compute Utah_1/sub-0026043/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/Utah_1/sub-0026043/ses-1/anat/sub-0026043_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "Utah_1/sub-0026043/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Utah_1/sub-0026043/ses-1/label/catROI_sub-0026043_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/v6/MD5E-s61422--22ca0e4d7590dade42b0a1b741d9c68b.mat/MD5E-s61422--22ca0e4d7590dade42b0a1b741d9c68b.mat

Utah_1/sub-0026043/ses-1/label/catROI_sub-0026043_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/m2/MD5E-s188878--c4c19a4fb7ba44abaecdc5a467098b59.xml/MD5E-s188878--c4c19a4fb7ba44abaecdc5a467098b59.xml

Utah_1/sub-0026043/ses-1/label/catROIs_sub-0026043_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/1Z/MD5E-s120033--7eb6183a95440f81f8eaea44e4c190bc.mat/MD5E-s120033--7eb6183a95440f81f8eaea44e4c190bc.mat

Utah_1/sub-0026043/ses-1/label/catROIs_sub-0026043_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/kp/MD5E-s332108--72a3a5d985f3f3265ec62989bad34d8a.xml/MD5E-s332108--72a3a5d985f3f3265ec62989bad34d8a.xml

Utah_1/sub-0026043/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026043_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Utah_1/sub-0026043/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026043_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/kv/MD5E-s437088--88357d581f0cbe4d725d640d2ebdd774.nii.gz/MD5E-s437088--88357d581f0cbe4d725d640d2ebdd774.nii.gz

Utah_1/sub-0026043/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026043_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Utah_1/sub-0026043/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026043_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/k3/MD5E-s488493--d461de639ad286c4d6c723550e3f8c00.nii.gz/MD5E-s488493--d461de639ad286c4d6c723550e3f8c00.nii.gz

Utah_1/sub-0026043/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026043_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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Utah_1/sub-0026043/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026043_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/2F/MD5E-s701426--1ac7e8c9dbee0c0b36e1322e1f3ee157.nii.gz/MD5E-s701426--1ac7e8c9dbee0c0b36e1322e1f3ee157.nii.gz

Utah_1/sub-0026043/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026043_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Utah_1/sub-0026043/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026043_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K7/gg/MD5E-s771598--8901af96edaf2c4c8ec854eac089333a.nii.gz/MD5E-s771598--8901af96edaf2c4c8ec854eac089333a.nii.gz

Utah_1/sub-0026043/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026043_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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Utah_1/sub-0026043/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026043_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Zj/6J/MD5E-s70250--b22073eec186f68defc0eb4329a698d6.nii.gz/MD5E-s70250--b22073eec186f68defc0eb4329a698d6.nii.gz

Utah_1/sub-0026043/ses-1/mri/aal3_sub-0026043_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Utah_1/sub-0026043/ses-1/mri/aal3_sub-0026043_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/3x/MD5E-s490028--71ef4ba1289386330081b2e84c624eee.nii.gz/MD5E-s490028--71ef4ba1289386330081b2e84c624eee.nii.gz

Utah_1/sub-0026043/ses-1/mri/anatomy3_sub-0026043_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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Utah_1/sub-0026043/ses-1/mri/anatomy3_sub-0026043_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/k0/MD5E-s366460--2c8dd80804b4920ad62ee5c2c3d82d3d.nii.gz/MD5E-s366460--2c8dd80804b4920ad62ee5c2c3d82d3d.nii.gz

Utah_1/sub-0026043/ses-1/mri/anon_misub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/anon_msub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/cat_sub-0026043_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/pW/ff/MD5E-s274109--53c2a46f820551a84af5c66e371da8d6.nii.gz/MD5E-s274109--53c2a46f820551a84af5c66e371da8d6.nii.gz

Utah_1/sub-0026043/ses-1/mri/cobra_sub-0026043_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Utah_1/sub-0026043/ses-1/mri/cobra_sub-0026043_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/1v/Px/MD5E-s134173--f02782be809b0490b1b9bcdc51eda718.nii.gz/MD5E-s134173--f02782be809b0490b1b9bcdc51eda718.nii.gz

Utah_1/sub-0026043/ses-1/mri/hammers_sub-0026043_ses-1_run-1_T1w.csv

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Utah_1/sub-0026043/ses-1/mri/hammers_sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/ibsr_sub-0026043_ses-1_run-1_T1w.csv

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Utah_1/sub-0026043/ses-1/mri/ibsr_sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/it_sub-0026043_ses-1_run-1_T1w_affine_reorient.mat

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Utah_1/sub-0026043/ses-1/mri/it_sub-0026043_ses-1_run-1_T1w_rigid_reorient.mat

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Utah_1/sub-0026043/ses-1/mri/iy_sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/julichbrain_sub-0026043_ses-1_run-1_T1w.csv

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Utah_1/sub-0026043/ses-1/mri/julichbrain_sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/lpba40_sub-0026043_ses-1_run-1_T1w.csv

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Utah_1/sub-0026043/ses-1/mri/lpba40_sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/m0wp1sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/m0wp2sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/m0wp3sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/mori_sub-0026043_ses-1_run-1_T1w.csv

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Utah_1/sub-0026043/ses-1/mri/mori_sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/mwp1sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/mwp2sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/mwp3sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/neuromorphometrics_sub-0026043_ses-1_run-1_T1w.csv

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Utah_1/sub-0026043/ses-1/mri/neuromorphometrics_sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/p0sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/p1sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/p2sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/p3sub-0026043_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026043/ses-1/mri/rp1sub-0026043_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026043/ses-1/mri/rp2sub-0026043_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026043/ses-1/mri/rp3sub-0026043_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026043/ses-1/mri/t_sub-0026043_ses-1_run-1_T1w_affine_reorient.mat

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Utah_1/sub-0026043/ses-1/mri/t_sub-0026043_ses-1_run-1_T1w_rigid_reorient.mat

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Utah_1/sub-0026043/ses-1/mri/thalamus_sub-0026043_ses-1_run-1_T1w.csv

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Utah_1/sub-0026043/ses-1/mri/thalamus_sub-0026043_ses-1_run-1_T1w.nii.gz

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