[DATALAD RUNCMD] Compute SWU_2/sub-0027180/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_2/sub-0027180/ses-1/anat/sub-0027180_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_2/sub-0027180/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_2/sub-0027180/ses-1/label/catROI_sub-0027180_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/85/JQ/MD5E-s61198--3024b5fedfb9ae78f28f7525a4b91e31.mat/MD5E-s61198--3024b5fedfb9ae78f28f7525a4b91e31.mat

SWU_2/sub-0027180/ses-1/label/catROI_sub-0027180_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/Xv/MD5E-s188587--61c5ba3278c792ee523028c0e284d14a.xml/MD5E-s188587--61c5ba3278c792ee523028c0e284d14a.xml

SWU_2/sub-0027180/ses-1/label/catROIs_sub-0027180_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/44/27/MD5E-s120068--e95de1cfd0496a50e799aac2a87b3642.mat/MD5E-s120068--e95de1cfd0496a50e799aac2a87b3642.mat

SWU_2/sub-0027180/ses-1/label/catROIs_sub-0027180_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/jk/MD5E-s332102--035e2b8953c15cb4c9ad445d72cb9c80.xml/MD5E-s332102--035e2b8953c15cb4c9ad445d72cb9c80.xml

SWU_2/sub-0027180/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_2/sub-0027180/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7v/FV/MD5E-s177766--fa6b712035fc228571090903eb03d0ac.nii.gz/MD5E-s177766--fa6b712035fc228571090903eb03d0ac.nii.gz

SWU_2/sub-0027180/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_2/sub-0027180/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/wW/MD5E-s198247--7e5c830dedb553030a83b6bd402f65e8.nii.gz/MD5E-s198247--7e5c830dedb553030a83b6bd402f65e8.nii.gz

SWU_2/sub-0027180/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_2/sub-0027180/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZG/88/MD5E-s266575--0a618767fa4733c2d50f9d32a3204e43.nii.gz/MD5E-s266575--0a618767fa4733c2d50f9d32a3204e43.nii.gz

SWU_2/sub-0027180/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_2/sub-0027180/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/Xz/MD5E-s295845--0bafe8203e0468a4de75a85933a518dc.nii.gz/MD5E-s295845--0bafe8203e0468a4de75a85933a518dc.nii.gz

SWU_2/sub-0027180/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_2/sub-0027180/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z1/Jp/MD5E-s25477--efae07d50014210a2175e996dd603a80.nii.gz/MD5E-s25477--efae07d50014210a2175e996dd603a80.nii.gz

SWU_2/sub-0027180/ses-1/mri/aal3_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_2/sub-0027180/ses-1/mri/aal3_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/W5/MD5E-s198454--7e6c2b7ab7f28273b5032973893c8e71.nii.gz/MD5E-s198454--7e6c2b7ab7f28273b5032973893c8e71.nii.gz

SWU_2/sub-0027180/ses-1/mri/anatomy3_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_2/sub-0027180/ses-1/mri/anatomy3_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/gQ/MD5E-s145205--94b6d40cd052f183046408d0aecccbb9.nii.gz/MD5E-s145205--94b6d40cd052f183046408d0aecccbb9.nii.gz

SWU_2/sub-0027180/ses-1/mri/anon_misub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/24/MD5E-s9432207--423be800d64a6676bb1351b76f74a955.nii.gz/MD5E-s9432207--423be800d64a6676bb1351b76f74a955.nii.gz

SWU_2/sub-0027180/ses-1/mri/anon_msub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4V/P6/MD5E-s10549191--0b281163c142d3f346c76d3f78f3c21e.nii.gz/MD5E-s10549191--0b281163c142d3f346c76d3f78f3c21e.nii.gz

SWU_2/sub-0027180/ses-1/mri/cat_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P0/1g/MD5E-s106461--b15e406053a91381c6977a51033bcb3b.nii.gz/MD5E-s106461--b15e406053a91381c6977a51033bcb3b.nii.gz

SWU_2/sub-0027180/ses-1/mri/cobra_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_2/sub-0027180/ses-1/mri/cobra_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/1V/MD5E-s50191--43483193825adee21833441f786a134e.nii.gz/MD5E-s50191--43483193825adee21833441f786a134e.nii.gz

SWU_2/sub-0027180/ses-1/mri/hammers_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_2/sub-0027180/ses-1/mri/hammers_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/M5/MD5E-s156995--80d522936c82bead6c00bf1c291de843.nii.gz/MD5E-s156995--80d522936c82bead6c00bf1c291de843.nii.gz

SWU_2/sub-0027180/ses-1/mri/ibsr_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_2/sub-0027180/ses-1/mri/ibsr_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/3k/MD5E-s165166--623d64b5704fb660f21da713c90c3400.nii.gz/MD5E-s165166--623d64b5704fb660f21da713c90c3400.nii.gz

SWU_2/sub-0027180/ses-1/mri/it_sub-0027180_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/9P/MD5E-s284--e7e11a0ee4868b232a3e65471ef1c1da.mat/MD5E-s284--e7e11a0ee4868b232a3e65471ef1c1da.mat

SWU_2/sub-0027180/ses-1/mri/it_sub-0027180_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/K9/MD5E-s283--30a67de36dae7e7df8cf0a125a32bc00.mat/MD5E-s283--30a67de36dae7e7df8cf0a125a32bc00.mat

SWU_2/sub-0027180/ses-1/mri/iy_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/WG/MD5E-s50854716--6d720182e35986594c2069622ce23903.nii.gz/MD5E-s50854716--6d720182e35986594c2069622ce23903.nii.gz

SWU_2/sub-0027180/ses-1/mri/julichbrain_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_2/sub-0027180/ses-1/mri/julichbrain_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/x2/MD5E-s212535--523afebc5768d05acf972d104153bd5a.nii.gz/MD5E-s212535--523afebc5768d05acf972d104153bd5a.nii.gz

SWU_2/sub-0027180/ses-1/mri/lpba40_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/lpba40_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/zz/MD5E-s154167--d8ce16c74ee59e176777d0fe9ef22dc7.nii.gz/MD5E-s154167--d8ce16c74ee59e176777d0fe9ef22dc7.nii.gz

SWU_2/sub-0027180/ses-1/mri/m0wp1sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/m0wp2sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/KW/MD5E-s2327437--b0a5dfe47e4c5161e6dea4f259070a49.nii.gz/MD5E-s2327437--b0a5dfe47e4c5161e6dea4f259070a49.nii.gz

SWU_2/sub-0027180/ses-1/mri/m0wp3sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/mori_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/mori_sub-0027180_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027180/ses-1/mri/mwp1sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/mwp2sub-0027180_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027180/ses-1/mri/mwp3sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/neuromorphometrics_sub-0027180_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/neuromorphometrics_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/p0sub-0027180_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027180/ses-1/mri/p1sub-0027180_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027180/ses-1/mri/p2sub-0027180_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027180/ses-1/mri/p3sub-0027180_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027180/ses-1/mri/rp1sub-0027180_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027180/ses-1/mri/rp2sub-0027180_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027180/ses-1/mri/rp3sub-0027180_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027180/ses-1/mri/t_sub-0027180_ses-1_run-1_T1w_affine_reorient.mat

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SWU_2/sub-0027180/ses-1/mri/t_sub-0027180_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/thalamus_sub-0027180_ses-1_run-1_T1w.csv

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SWU_2/sub-0027180/ses-1/mri/thalamus_sub-0027180_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027180/ses-1/mri/wj_sub-0027180_ses-1_run-1_T1w.nii.gz

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