[DATALAD RUNCMD] Compute LMU_1/sub-0025359/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025359/ses-1/anat/sub-0025359_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025359/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025359/ses-1/label/catROI_sub-0025359_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/24/MD5E-s57285--81666db88f06c55af67d29e5c544026c.mat/MD5E-s57285--81666db88f06c55af67d29e5c544026c.mat

LMU_1/sub-0025359/ses-1/label/catROI_sub-0025359_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/GW/MD5E-s189577--abac5d72d20d702aa4305c13d44eb754.xml/MD5E-s189577--abac5d72d20d702aa4305c13d44eb754.xml

LMU_1/sub-0025359/ses-1/label/catROIs_sub-0025359_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/j7/MD5E-s120116--2df835b7f38d0ed7ad952d502476a143.mat/MD5E-s120116--2df835b7f38d0ed7ad952d502476a143.mat

LMU_1/sub-0025359/ses-1/label/catROIs_sub-0025359_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/3G/MD5E-s332159--1cfc70b1dda71624d3666b8a7b047b27.xml/MD5E-s332159--1cfc70b1dda71624d3666b8a7b047b27.xml

LMU_1/sub-0025359/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025359/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/6V/MD5E-s173934--9b962f13cb21b2aa18a6746442e79cac.nii.gz/MD5E-s173934--9b962f13cb21b2aa18a6746442e79cac.nii.gz

LMU_1/sub-0025359/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025359/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/6G/MD5E-s194751--ad3086455b8bb94cb6ccbf3eefd3132c.nii.gz/MD5E-s194751--ad3086455b8bb94cb6ccbf3eefd3132c.nii.gz

LMU_1/sub-0025359/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025359/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/PZ/MD5E-s249486--d18987923caf7f5be2b33387414e1375.nii.gz/MD5E-s249486--d18987923caf7f5be2b33387414e1375.nii.gz

LMU_1/sub-0025359/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025359/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pw/8w/MD5E-s277875--777e2ce2beaa29150c840dee2ff0a41d.nii.gz/MD5E-s277875--777e2ce2beaa29150c840dee2ff0a41d.nii.gz

LMU_1/sub-0025359/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025359/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/0V/MD5E-s27021--d5b13db0a8b070b4e803c6499035cb3b.nii.gz/MD5E-s27021--d5b13db0a8b070b4e803c6499035cb3b.nii.gz

LMU_1/sub-0025359/ses-1/mri/aal3_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025359/ses-1/mri/aal3_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/xG/MD5E-s194681--421d0fd520a7e7bcce7c24704a89c0e9.nii.gz/MD5E-s194681--421d0fd520a7e7bcce7c24704a89c0e9.nii.gz

LMU_1/sub-0025359/ses-1/mri/anatomy3_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025359/ses-1/mri/anatomy3_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/JJ/MD5E-s140030--31eec24e819bed7534a4d8743e88739f.nii.gz/MD5E-s140030--31eec24e819bed7534a4d8743e88739f.nii.gz

LMU_1/sub-0025359/ses-1/mri/anon_misub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/FW/MD5E-s4194376--d21a9379cc1acbf470aaee691384a111.nii.gz/MD5E-s4194376--d21a9379cc1acbf470aaee691384a111.nii.gz

LMU_1/sub-0025359/ses-1/mri/anon_msub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pq/9x/MD5E-s11963502--16331678b90ec52b5506210aeda1447c.nii.gz/MD5E-s11963502--16331678b90ec52b5506210aeda1447c.nii.gz

LMU_1/sub-0025359/ses-1/mri/cat_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M3/Xq/MD5E-s107393--6ebb2ffd8fd60dce3b590fa93c16feef.nii.gz/MD5E-s107393--6ebb2ffd8fd60dce3b590fa93c16feef.nii.gz

LMU_1/sub-0025359/ses-1/mri/cobra_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025359/ses-1/mri/cobra_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/65/MD5E-s51924--2fea662a3f0c2262eeb4bbc10db0b5bd.nii.gz/MD5E-s51924--2fea662a3f0c2262eeb4bbc10db0b5bd.nii.gz

LMU_1/sub-0025359/ses-1/mri/hammers_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025359/ses-1/mri/hammers_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/4v/MD5E-s155602--3d0d80847ff62dd077e351171f192eb6.nii.gz/MD5E-s155602--3d0d80847ff62dd077e351171f192eb6.nii.gz

LMU_1/sub-0025359/ses-1/mri/ibsr_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025359/ses-1/mri/ibsr_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q3/Kk/MD5E-s159691--ae581191ecad79eae3c5ecaa3afd9160.nii.gz/MD5E-s159691--ae581191ecad79eae3c5ecaa3afd9160.nii.gz

LMU_1/sub-0025359/ses-1/mri/it_sub-0025359_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/4x/MD5E-s284--10f74527f6776bfe3552d30685dec6fe.mat/MD5E-s284--10f74527f6776bfe3552d30685dec6fe.mat

LMU_1/sub-0025359/ses-1/mri/it_sub-0025359_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6P/X6/MD5E-s283--47528e2fb41cbb3e0e1107ab0775c135.mat/MD5E-s283--47528e2fb41cbb3e0e1107ab0775c135.mat

LMU_1/sub-0025359/ses-1/mri/iy_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/V4/MD5E-s43164083--1d877610d2a9b39b1884d47cf82a86af.nii.gz/MD5E-s43164083--1d877610d2a9b39b1884d47cf82a86af.nii.gz

LMU_1/sub-0025359/ses-1/mri/julichbrain_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025359/ses-1/mri/julichbrain_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/wG/MD5E-s205954--ee26135409fd61f4fa5c606a96c303db.nii.gz/MD5E-s205954--ee26135409fd61f4fa5c606a96c303db.nii.gz

LMU_1/sub-0025359/ses-1/mri/lpba40_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025359/ses-1/mri/lpba40_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/Zj/MD5E-s154058--6b382cfd81549b7439600a9f7fab2c66.nii.gz/MD5E-s154058--6b382cfd81549b7439600a9f7fab2c66.nii.gz

LMU_1/sub-0025359/ses-1/mri/m0wp1sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/z7/MD5E-s2599453--69f5ecd655300b96d14cc0de8353a94e.nii.gz/MD5E-s2599453--69f5ecd655300b96d14cc0de8353a94e.nii.gz

LMU_1/sub-0025359/ses-1/mri/m0wp2sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/j8/MD5E-s2253348--15d2d97a81e135dc2e08ed42a755e653.nii.gz/MD5E-s2253348--15d2d97a81e135dc2e08ed42a755e653.nii.gz

LMU_1/sub-0025359/ses-1/mri/m0wp3sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GZ/4f/MD5E-s2588174--83e2361def50d4dacad6ef10a32fe9e9.nii.gz/MD5E-s2588174--83e2361def50d4dacad6ef10a32fe9e9.nii.gz

LMU_1/sub-0025359/ses-1/mri/mori_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025359/ses-1/mri/mori_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/wK/MD5E-s176616--d1d0995438cf60283b1b2b6172bb1eed.nii.gz/MD5E-s176616--d1d0995438cf60283b1b2b6172bb1eed.nii.gz

LMU_1/sub-0025359/ses-1/mri/mwp1sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/80/MD5E-s2615303--def63e1a40ec816bb34b2f3b2e349704.nii.gz/MD5E-s2615303--def63e1a40ec816bb34b2f3b2e349704.nii.gz

LMU_1/sub-0025359/ses-1/mri/mwp2sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/vq/MD5E-s2256120--28beccbde62a4ef1e3ac25f0899c8120.nii.gz/MD5E-s2256120--28beccbde62a4ef1e3ac25f0899c8120.nii.gz

LMU_1/sub-0025359/ses-1/mri/mwp3sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/ZX/MD5E-s2589185--580b2b168d8860724d7303d5320ef8fc.nii.gz/MD5E-s2589185--580b2b168d8860724d7303d5320ef8fc.nii.gz

LMU_1/sub-0025359/ses-1/mri/neuromorphometrics_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_1/sub-0025359/ses-1/mri/neuromorphometrics_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/mP/MD5E-s207399--087d39fc85340e331dac14379498c3ea.nii.gz/MD5E-s207399--087d39fc85340e331dac14379498c3ea.nii.gz

LMU_1/sub-0025359/ses-1/mri/p0sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/vp/MD5E-s609814--0986961b09b2b3b84d0133d16fb15654.nii.gz/MD5E-s609814--0986961b09b2b3b84d0133d16fb15654.nii.gz

LMU_1/sub-0025359/ses-1/mri/p1sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/77/MD5E-s647489--36bb86aa1f1251175591ef34ec792718.nii.gz/MD5E-s647489--36bb86aa1f1251175591ef34ec792718.nii.gz

LMU_1/sub-0025359/ses-1/mri/p2sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/zk/MD5E-s398134--cc564cc4c24524f21c0a4d9683832fd9.nii.gz/MD5E-s398134--cc564cc4c24524f21c0a4d9683832fd9.nii.gz

LMU_1/sub-0025359/ses-1/mri/p3sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xq/8q/MD5E-s396212--9182623ab8927fe7d68378299d67823c.nii.gz/MD5E-s396212--9182623ab8927fe7d68378299d67823c.nii.gz

LMU_1/sub-0025359/ses-1/mri/rp1sub-0025359_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/vm/MD5E-s451646--9a756d6eccb4bc860c730874dd748cb4.nii.gz/MD5E-s451646--9a756d6eccb4bc860c730874dd748cb4.nii.gz

LMU_1/sub-0025359/ses-1/mri/rp2sub-0025359_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025359/ses-1/mri/rp3sub-0025359_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025359/ses-1/mri/t_sub-0025359_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025359/ses-1/mri/t_sub-0025359_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/fQ/MD5E-s284--f8025478a018ae331b136a446e277a22.mat/MD5E-s284--f8025478a018ae331b136a446e277a22.mat

LMU_1/sub-0025359/ses-1/mri/thalamus_sub-0025359_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025359/ses-1/mri/thalamus_sub-0025359_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/1w/MD5E-s18898--849b6975862ea85a7b6e32d5fdc815a5.nii.gz/MD5E-s18898--849b6975862ea85a7b6e32d5fdc815a5.nii.gz

LMU_1/sub-0025359/ses-1/mri/wj_sub-0025359_ses-1_run-1_T1w.nii.gz

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