[DATALAD RUNCMD] Compute SWU_4/sub-0025644/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025644/ses-1/anat/sub-0025644_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025644/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025644/ses-1/label/catROI_sub-0025644_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/7v/MD5E-s61228--f96a09060f60e88cc7195d1a0c5743c9.mat/MD5E-s61228--f96a09060f60e88cc7195d1a0c5743c9.mat

SWU_4/sub-0025644/ses-1/label/catROI_sub-0025644_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/8m/MD5E-s188773--7d141d938882d7bb5f5577cf4b4fc66b.xml/MD5E-s188773--7d141d938882d7bb5f5577cf4b4fc66b.xml

SWU_4/sub-0025644/ses-1/label/catROIs_sub-0025644_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/84/MD5E-s120005--f54b71fcc291ce289c1eb2b15f9d10f8.mat/MD5E-s120005--f54b71fcc291ce289c1eb2b15f9d10f8.mat

SWU_4/sub-0025644/ses-1/label/catROIs_sub-0025644_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zk/wM/MD5E-s332126--9f8ca9127b1048497e594ace564ca525.xml/MD5E-s332126--9f8ca9127b1048497e594ace564ca525.xml

SWU_4/sub-0025644/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025644/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/j4/MD5E-s162305--d19e8ec71ddecdb4afb1f374c7dbc2d6.nii.gz/MD5E-s162305--d19e8ec71ddecdb4afb1f374c7dbc2d6.nii.gz

SWU_4/sub-0025644/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025644/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/fp/MD5E-s181786--09bb64c0d6ae217c44067b8c66c0ca96.nii.gz/MD5E-s181786--09bb64c0d6ae217c44067b8c66c0ca96.nii.gz

SWU_4/sub-0025644/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025644/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/m9/MD5E-s243808--6d455bb5e326740ef90a78cfa13227a6.nii.gz/MD5E-s243808--6d455bb5e326740ef90a78cfa13227a6.nii.gz

SWU_4/sub-0025644/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025644/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/P2/MD5E-s271600--4f8cf9d5e111171229a4d1437af935ec.nii.gz/MD5E-s271600--4f8cf9d5e111171229a4d1437af935ec.nii.gz

SWU_4/sub-0025644/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025644/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J1/G2/MD5E-s25325--7cc082820de7914c5ade0100e87064d0.nii.gz/MD5E-s25325--7cc082820de7914c5ade0100e87064d0.nii.gz

SWU_4/sub-0025644/ses-1/mri/aal3_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025644/ses-1/mri/aal3_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fg/p9/MD5E-s184739--7a827486ca3da62c28172c6946e6b7be.nii.gz/MD5E-s184739--7a827486ca3da62c28172c6946e6b7be.nii.gz

SWU_4/sub-0025644/ses-1/mri/anatomy3_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025644/ses-1/mri/anatomy3_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/8P/MD5E-s133585--27d91cc05504562cdfc78ba8f63b18a9.nii.gz/MD5E-s133585--27d91cc05504562cdfc78ba8f63b18a9.nii.gz

SWU_4/sub-0025644/ses-1/mri/anon_misub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/kq/MD5E-s9275170--f986b0bed029bdc746e3a6200fc12ab4.nii.gz/MD5E-s9275170--f986b0bed029bdc746e3a6200fc12ab4.nii.gz

SWU_4/sub-0025644/ses-1/mri/anon_msub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/k7/MD5E-s10654524--749cacf7f031e19ca09edea880db6d24.nii.gz/MD5E-s10654524--749cacf7f031e19ca09edea880db6d24.nii.gz

SWU_4/sub-0025644/ses-1/mri/cat_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/ZK/MD5E-s99238--65619937a0f7d3027a0f6120c54de5e9.nii.gz/MD5E-s99238--65619937a0f7d3027a0f6120c54de5e9.nii.gz

SWU_4/sub-0025644/ses-1/mri/cobra_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025644/ses-1/mri/cobra_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/8m/MD5E-s48917--2ef8a309701949f43bb21802846593cf.nii.gz/MD5E-s48917--2ef8a309701949f43bb21802846593cf.nii.gz

SWU_4/sub-0025644/ses-1/mri/hammers_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025644/ses-1/mri/hammers_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q2/3Z/MD5E-s146181--bd456e8ae3996af87f1d155316b5f2da.nii.gz/MD5E-s146181--bd456e8ae3996af87f1d155316b5f2da.nii.gz

SWU_4/sub-0025644/ses-1/mri/ibsr_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025644/ses-1/mri/ibsr_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/J4/MD5E-s154751--41e767a8e5b2f38a18d1b94a9a71dd0f.nii.gz/MD5E-s154751--41e767a8e5b2f38a18d1b94a9a71dd0f.nii.gz

SWU_4/sub-0025644/ses-1/mri/it_sub-0025644_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/MM/MD5E-s283--5ef5fbf7a267804cdab106a5ef4355a3.mat/MD5E-s283--5ef5fbf7a267804cdab106a5ef4355a3.mat

SWU_4/sub-0025644/ses-1/mri/it_sub-0025644_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G7/z3/MD5E-s283--5a16e34b8d2fc415727a14b2dc2a5b14.mat/MD5E-s283--5a16e34b8d2fc415727a14b2dc2a5b14.mat

SWU_4/sub-0025644/ses-1/mri/iy_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/6p/MD5E-s44061024--1c8d5310443479fb47a4a488fe3ecd47.nii.gz/MD5E-s44061024--1c8d5310443479fb47a4a488fe3ecd47.nii.gz

SWU_4/sub-0025644/ses-1/mri/julichbrain_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025644/ses-1/mri/julichbrain_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gp/3F/MD5E-s195441--f51e6805a633beb3cd569bcf5e9e5b5e.nii.gz/MD5E-s195441--f51e6805a633beb3cd569bcf5e9e5b5e.nii.gz

SWU_4/sub-0025644/ses-1/mri/lpba40_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025644/ses-1/mri/lpba40_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fg/jv/MD5E-s141793--8eee3ca1404c8b61d88fd4b4180af86e.nii.gz/MD5E-s141793--8eee3ca1404c8b61d88fd4b4180af86e.nii.gz

SWU_4/sub-0025644/ses-1/mri/m0wp1sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jZ/0M/MD5E-s2584100--acaeada381ea2c7e51dca529e648121f.nii.gz/MD5E-s2584100--acaeada381ea2c7e51dca529e648121f.nii.gz

SWU_4/sub-0025644/ses-1/mri/m0wp2sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9X/fJ/MD5E-s2307242--af31ff509d396c047f48c463d6a1a287.nii.gz/MD5E-s2307242--af31ff509d396c047f48c463d6a1a287.nii.gz

SWU_4/sub-0025644/ses-1/mri/m0wp3sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JQ/Wf/MD5E-s2487876--4d30b1ca3cf500edf5226f0964b80dcc.nii.gz/MD5E-s2487876--4d30b1ca3cf500edf5226f0964b80dcc.nii.gz

SWU_4/sub-0025644/ses-1/mri/mori_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025644/ses-1/mri/mori_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/xm/MD5E-s170805--eee1bd760a6455a46fbb4d54100a7941.nii.gz/MD5E-s170805--eee1bd760a6455a46fbb4d54100a7941.nii.gz

SWU_4/sub-0025644/ses-1/mri/mwp1sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/5v/MD5E-s2590059--d57031c4edd2a5519a592d8bc45746a0.nii.gz/MD5E-s2590059--d57031c4edd2a5519a592d8bc45746a0.nii.gz

SWU_4/sub-0025644/ses-1/mri/mwp2sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/w3/MD5E-s2306336--f4e18bd2aa0b6283243d335a8c447cba.nii.gz/MD5E-s2306336--f4e18bd2aa0b6283243d335a8c447cba.nii.gz

SWU_4/sub-0025644/ses-1/mri/mwp3sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VK/Vx/MD5E-s2484775--6d9dcc97977d39931bd4d6eed789e937.nii.gz/MD5E-s2484775--6d9dcc97977d39931bd4d6eed789e937.nii.gz

SWU_4/sub-0025644/ses-1/mri/neuromorphometrics_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025644/ses-1/mri/neuromorphometrics_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/Zp/MD5E-s196361--ebfa00fdeff58546f58718d9850f9496.nii.gz/MD5E-s196361--ebfa00fdeff58546f58718d9850f9496.nii.gz

SWU_4/sub-0025644/ses-1/mri/p0sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/55/0k/MD5E-s615204--5b7be3d5404d3fcbe542e8e02083c762.nii.gz/MD5E-s615204--5b7be3d5404d3fcbe542e8e02083c762.nii.gz

SWU_4/sub-0025644/ses-1/mri/p1sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/q8/MD5E-s654659--57b4d4bcce608542fca12cc62bdaad2f.nii.gz/MD5E-s654659--57b4d4bcce608542fca12cc62bdaad2f.nii.gz

SWU_4/sub-0025644/ses-1/mri/p2sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/vj/MD5E-s445179--f5a437e9303626e362c5ed858ff05bad.nii.gz/MD5E-s445179--f5a437e9303626e362c5ed858ff05bad.nii.gz

SWU_4/sub-0025644/ses-1/mri/p3sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/5P/MD5E-s350273--2a5b9ae216e321581b77b6c71c7790ba.nii.gz/MD5E-s350273--2a5b9ae216e321581b77b6c71c7790ba.nii.gz

SWU_4/sub-0025644/ses-1/mri/rp1sub-0025644_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/Mz/MD5E-s453939--3d2b94185dbd2824facb04fd46e7fb87.nii.gz/MD5E-s453939--3d2b94185dbd2824facb04fd46e7fb87.nii.gz

SWU_4/sub-0025644/ses-1/mri/rp2sub-0025644_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/XZ/MD5E-s319476--c742af7eb685d6979db7a13ca80fc3f8.nii.gz/MD5E-s319476--c742af7eb685d6979db7a13ca80fc3f8.nii.gz

SWU_4/sub-0025644/ses-1/mri/rp3sub-0025644_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W0/Fv/MD5E-s273927--896a5c2c7599740aa567c62815e28f41.nii.gz/MD5E-s273927--896a5c2c7599740aa567c62815e28f41.nii.gz

SWU_4/sub-0025644/ses-1/mri/t_sub-0025644_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7P/4M/MD5E-s284--ef6cc51db401e5c343f03abbe9521a05.mat/MD5E-s284--ef6cc51db401e5c343f03abbe9521a05.mat

SWU_4/sub-0025644/ses-1/mri/t_sub-0025644_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/Fk/MD5E-s283--b6a92e070d82aaebbd54f869032ab0ad.mat/MD5E-s283--b6a92e070d82aaebbd54f869032ab0ad.mat

SWU_4/sub-0025644/ses-1/mri/thalamus_sub-0025644_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025644/ses-1/mri/thalamus_sub-0025644_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/57/Fx/MD5E-s16233--bccea57b4bfbf7e642255789f37f3b28.nii.gz/MD5E-s16233--bccea57b4bfbf7e642255789f37f3b28.nii.gz

SWU_4/sub-0025644/ses-1/mri/wj_sub-0025644_ses-1_run-1_T1w.nii.gz

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