[DATALAD RUNCMD] Compute BNU_1/sub-0025899/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025899/ses-1/anat/sub-0025899_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025899/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025899/ses-1/label/catROI_sub-0025899_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/4Z/MD5E-s61194--c949d582904bf58b839fd4718b4e3bcd.mat/MD5E-s61194--c949d582904bf58b839fd4718b4e3bcd.mat

BNU_1/sub-0025899/ses-1/label/catROI_sub-0025899_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z7/mj/MD5E-s188590--7b393f2c7fe7fd4540c48ba8f9ee8fff.xml/MD5E-s188590--7b393f2c7fe7fd4540c48ba8f9ee8fff.xml

BNU_1/sub-0025899/ses-1/label/catROIs_sub-0025899_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/WX/MD5E-s120042--6e470108b966f80fe7af0b1b8f6d90d4.mat/MD5E-s120042--6e470108b966f80fe7af0b1b8f6d90d4.mat

BNU_1/sub-0025899/ses-1/label/catROIs_sub-0025899_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/k0/MD5E-s332127--32fafda93a15b7e454cef9208d613ca8.xml/MD5E-s332127--32fafda93a15b7e454cef9208d613ca8.xml

BNU_1/sub-0025899/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025899/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/f1/MD5E-s149466--a5b75a6cf561d9fd7ed2eef6395cf2df.nii.gz/MD5E-s149466--a5b75a6cf561d9fd7ed2eef6395cf2df.nii.gz

BNU_1/sub-0025899/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025899/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/xq/MD5E-s169545--7b64ccecdfac42bdd8cccaa5eb31fc88.nii.gz/MD5E-s169545--7b64ccecdfac42bdd8cccaa5eb31fc88.nii.gz

BNU_1/sub-0025899/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025899/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/Qp/MD5E-s226836--e6fef8d306e8b459323e47d803232222.nii.gz/MD5E-s226836--e6fef8d306e8b459323e47d803232222.nii.gz

BNU_1/sub-0025899/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025899/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/Kv/MD5E-s253500--6a2d0a4c7572100d010639fa3702adb4.nii.gz/MD5E-s253500--6a2d0a4c7572100d010639fa3702adb4.nii.gz

BNU_1/sub-0025899/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025899/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/4m/MD5E-s21299--c87321726f2ef4aa6ace0c0d6874f44c.nii.gz/MD5E-s21299--c87321726f2ef4aa6ace0c0d6874f44c.nii.gz

BNU_1/sub-0025899/ses-1/mri/aal3_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025899/ses-1/mri/aal3_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VP/XX/MD5E-s172790--4aef759a0e0f67b25697ce793ef3fda4.nii.gz/MD5E-s172790--4aef759a0e0f67b25697ce793ef3fda4.nii.gz

BNU_1/sub-0025899/ses-1/mri/anatomy3_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025899/ses-1/mri/anatomy3_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Z/7Q/MD5E-s121858--1c396d5b708d51cac75a0178f2ae354d.nii.gz/MD5E-s121858--1c396d5b708d51cac75a0178f2ae354d.nii.gz

BNU_1/sub-0025899/ses-1/mri/anon_misub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/w9/MD5E-s4163208--7e611b2b2bb8542b90c0cdd6a9ce26c2.nii.gz/MD5E-s4163208--7e611b2b2bb8542b90c0cdd6a9ce26c2.nii.gz

BNU_1/sub-0025899/ses-1/mri/anon_msub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/pg/MD5E-s10534621--c3044d4756e284eb8bdd635a27bf2273.nii.gz/MD5E-s10534621--c3044d4756e284eb8bdd635a27bf2273.nii.gz

BNU_1/sub-0025899/ses-1/mri/cat_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jm/08/MD5E-s92593--d74ae9a457f0b98601c57b4aeef55c9e.nii.gz/MD5E-s92593--d74ae9a457f0b98601c57b4aeef55c9e.nii.gz

BNU_1/sub-0025899/ses-1/mri/cobra_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025899/ses-1/mri/cobra_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/pX/MD5E-s43619--5a022536c5649a8abba6bb949c1a5d69.nii.gz/MD5E-s43619--5a022536c5649a8abba6bb949c1a5d69.nii.gz

BNU_1/sub-0025899/ses-1/mri/hammers_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025899/ses-1/mri/hammers_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/5q/MD5E-s136599--70e517ec2ad7d38bedce981d845d4321.nii.gz/MD5E-s136599--70e517ec2ad7d38bedce981d845d4321.nii.gz

BNU_1/sub-0025899/ses-1/mri/ibsr_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025899/ses-1/mri/ibsr_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/mG/MD5E-s142901--534c620f32e1ebc0b61f7493d33e19bb.nii.gz/MD5E-s142901--534c620f32e1ebc0b61f7493d33e19bb.nii.gz

BNU_1/sub-0025899/ses-1/mri/it_sub-0025899_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/48/MD5E-s283--8d1b81941dc53cb07dd54d9a5e94048d.mat/MD5E-s283--8d1b81941dc53cb07dd54d9a5e94048d.mat

BNU_1/sub-0025899/ses-1/mri/it_sub-0025899_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/Kp/MD5E-s283--04547e0542499ab24d9f41652db37aff.mat/MD5E-s283--04547e0542499ab24d9f41652db37aff.mat

BNU_1/sub-0025899/ses-1/mri/iy_sub-0025899_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/GX/x7/MD5E-s37943054--17f5557a1d0414aaaf1c44f9995cd1c9.nii.gz/MD5E-s37943054--17f5557a1d0414aaaf1c44f9995cd1c9.nii.gz

BNU_1/sub-0025899/ses-1/mri/julichbrain_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025899/ses-1/mri/julichbrain_sub-0025899_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025899/ses-1/mri/lpba40_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025899/ses-1/mri/lpba40_sub-0025899_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025899/ses-1/mri/m0wp1sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/1P/MD5E-s2572808--3846dc082f99e831630a223371ab7166.nii.gz/MD5E-s2572808--3846dc082f99e831630a223371ab7166.nii.gz

BNU_1/sub-0025899/ses-1/mri/m0wp2sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/06/MD5E-s2278542--9835e0fb12c3b48239553d94c6054b2f.nii.gz/MD5E-s2278542--9835e0fb12c3b48239553d94c6054b2f.nii.gz

BNU_1/sub-0025899/ses-1/mri/m0wp3sub-0025899_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Gp/pp/MD5E-s2424466--37b1f0f66dea05ae72708e4cfe51039b.nii.gz/MD5E-s2424466--37b1f0f66dea05ae72708e4cfe51039b.nii.gz

BNU_1/sub-0025899/ses-1/mri/mori_sub-0025899_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025899/ses-1/mri/mori_sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/fZ/MD5E-s158579--4e341ce3df30196bc132602f392dad72.nii.gz/MD5E-s158579--4e341ce3df30196bc132602f392dad72.nii.gz

BNU_1/sub-0025899/ses-1/mri/mwp1sub-0025899_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025899/ses-1/mri/mwp2sub-0025899_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025899/ses-1/mri/mwp3sub-0025899_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025899/ses-1/mri/neuromorphometrics_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025899/ses-1/mri/neuromorphometrics_sub-0025899_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025899/ses-1/mri/p0sub-0025899_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025899/ses-1/mri/p1sub-0025899_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025899/ses-1/mri/p2sub-0025899_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025899/ses-1/mri/p3sub-0025899_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025899/ses-1/mri/rp1sub-0025899_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025899/ses-1/mri/rp2sub-0025899_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025899/ses-1/mri/rp3sub-0025899_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025899/ses-1/mri/t_sub-0025899_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025899/ses-1/mri/t_sub-0025899_ses-1_run-1_T1w_rigid_reorient.mat

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BNU_1/sub-0025899/ses-1/mri/thalamus_sub-0025899_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025899/ses-1/mri/thalamus_sub-0025899_ses-1_run-1_T1w.nii.gz

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