[DATALAD RUNCMD] Compute MRN/sub-0027046/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027046/ses-1/anat/sub-0027046_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027046/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027046/ses-1/label/catROI_sub-0027046_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/KG/MD5E-s61259--2c065093df9165811fffafe863bd7c81.mat/MD5E-s61259--2c065093df9165811fffafe863bd7c81.mat

MRN/sub-0027046/ses-1/label/catROI_sub-0027046_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/gV/MD5E-s188662--98ed03a0725f39db223e0a01c5377501.xml/MD5E-s188662--98ed03a0725f39db223e0a01c5377501.xml

MRN/sub-0027046/ses-1/label/catROIs_sub-0027046_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/12/8p/MD5E-s120052--9219af54e38e9933206211ce50db9f61.mat/MD5E-s120052--9219af54e38e9933206211ce50db9f61.mat

MRN/sub-0027046/ses-1/label/catROIs_sub-0027046_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/5z/MD5E-s332099--3ca5a9644ce01eba1b13a005a3e35b43.xml/MD5E-s332099--3ca5a9644ce01eba1b13a005a3e35b43.xml

MRN/sub-0027046/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027046/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3J/jk/MD5E-s189264--7b154291ce5756658db3de6b5abc9dc9.nii.gz/MD5E-s189264--7b154291ce5756658db3de6b5abc9dc9.nii.gz

MRN/sub-0027046/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027046/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/Wz/MD5E-s211727--25994359cb2deffb9c4489254412eafa.nii.gz/MD5E-s211727--25994359cb2deffb9c4489254412eafa.nii.gz

MRN/sub-0027046/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027046/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/15/MD5E-s279520--03115492f19eb232b8ce4587886ccd5b.nii.gz/MD5E-s279520--03115492f19eb232b8ce4587886ccd5b.nii.gz

MRN/sub-0027046/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027046/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z3/g2/MD5E-s310763--5b796458a3cd350563d74ba482a7cc57.nii.gz/MD5E-s310763--5b796458a3cd350563d74ba482a7cc57.nii.gz

MRN/sub-0027046/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027046/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FW/jk/MD5E-s28095--945acf2d921ca7f6e77f61f15a0506e8.nii.gz/MD5E-s28095--945acf2d921ca7f6e77f61f15a0506e8.nii.gz

MRN/sub-0027046/ses-1/mri/aal3_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027046/ses-1/mri/aal3_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XF/5f/MD5E-s214671--c3c23365677d1bded7775808dd63ab26.nii.gz/MD5E-s214671--c3c23365677d1bded7775808dd63ab26.nii.gz

MRN/sub-0027046/ses-1/mri/anatomy3_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027046/ses-1/mri/anatomy3_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027046/ses-1/mri/anon_misub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WJ/vK/MD5E-s10269273--4493db28d40e94d94e79138e8dfb15b5.nii.gz/MD5E-s10269273--4493db28d40e94d94e79138e8dfb15b5.nii.gz

MRN/sub-0027046/ses-1/mri/anon_msub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/6x/MD5E-s11241027--b8a3efa0d6b5138279cd67dfae585690.nii.gz/MD5E-s11241027--b8a3efa0d6b5138279cd67dfae585690.nii.gz

MRN/sub-0027046/ses-1/mri/cat_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/9k/MD5E-s113483--3e2be7eec581ce76b425448fd8bce990.nii.gz/MD5E-s113483--3e2be7eec581ce76b425448fd8bce990.nii.gz

MRN/sub-0027046/ses-1/mri/cobra_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027046/ses-1/mri/cobra_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/gz/MD5E-s54857--eb6a9226af4164f8008cfc228db5ed34.nii.gz/MD5E-s54857--eb6a9226af4164f8008cfc228db5ed34.nii.gz

MRN/sub-0027046/ses-1/mri/hammers_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027046/ses-1/mri/hammers_sub-0027046_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Mx/Pv/MD5E-s167964--0672ffc19fc61ccfadc4318d61b50aef.nii.gz/MD5E-s167964--0672ffc19fc61ccfadc4318d61b50aef.nii.gz

MRN/sub-0027046/ses-1/mri/ibsr_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027046/ses-1/mri/ibsr_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wv/PQ/MD5E-s176435--afc2f395b636a6c34c97890e3792429c.nii.gz/MD5E-s176435--afc2f395b636a6c34c97890e3792429c.nii.gz

MRN/sub-0027046/ses-1/mri/it_sub-0027046_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/0Z/MD5E-s282--57ed15ff9c541906bf524161f185d910.mat/MD5E-s282--57ed15ff9c541906bf524161f185d910.mat

MRN/sub-0027046/ses-1/mri/it_sub-0027046_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/Zq/MD5E-s283--a840d3f006161d4b0eee04b4a580e65f.mat/MD5E-s283--a840d3f006161d4b0eee04b4a580e65f.mat

MRN/sub-0027046/ses-1/mri/iy_sub-0027046_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027046/ses-1/mri/julichbrain_sub-0027046_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MRN/sub-0027046/ses-1/mri/julichbrain_sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/lpba40_sub-0027046_ses-1_run-1_T1w.csv

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MRN/sub-0027046/ses-1/mri/lpba40_sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/m0wp1sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/m0wp2sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/m0wp3sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/mori_sub-0027046_ses-1_run-1_T1w.csv

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MRN/sub-0027046/ses-1/mri/mori_sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/mwp1sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/mwp2sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/mwp3sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/neuromorphometrics_sub-0027046_ses-1_run-1_T1w.csv

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MRN/sub-0027046/ses-1/mri/neuromorphometrics_sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/p0sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/p1sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/p2sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/p3sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/rp1sub-0027046_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027046/ses-1/mri/rp2sub-0027046_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027046/ses-1/mri/rp3sub-0027046_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027046/ses-1/mri/t_sub-0027046_ses-1_run-1_T1w_affine_reorient.mat

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MRN/sub-0027046/ses-1/mri/t_sub-0027046_ses-1_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027046/ses-1/mri/thalamus_sub-0027046_ses-1_run-1_T1w.csv

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MRN/sub-0027046/ses-1/mri/thalamus_sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/wj_sub-0027046_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027046/ses-1/mri/wmisub-0027046_ses-1_run-1_T1w.nii.gz

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