[DATALAD RUNCMD] Compute SWU_4/sub-0025690/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025690/ses-2/anat/sub-0025690_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025690/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025690/ses-2/label/catROI_sub-0025690_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/Mf/MD5E-s57947--f00c961335f4d3b635c09b09fd0ec3c7.mat/MD5E-s57947--f00c961335f4d3b635c09b09fd0ec3c7.mat

SWU_4/sub-0025690/ses-2/label/catROI_sub-0025690_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1W/07/MD5E-s188375--0c14d0f23f29ae592e819a683764ac54.xml/MD5E-s188375--0c14d0f23f29ae592e819a683764ac54.xml

SWU_4/sub-0025690/ses-2/label/catROIs_sub-0025690_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M7/Q6/MD5E-s119979--4e93dc24806d86a065dcecd2f111448d.mat/MD5E-s119979--4e93dc24806d86a065dcecd2f111448d.mat

SWU_4/sub-0025690/ses-2/label/catROIs_sub-0025690_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/06/MD5E-s332144--6953a4657dfc853501c82004f6c6f1e1.xml/MD5E-s332144--6953a4657dfc853501c82004f6c6f1e1.xml

SWU_4/sub-0025690/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025690/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z6/6z/MD5E-s179362--d4066fe5d8834af3a6e32b4cefa7e263.nii.gz/MD5E-s179362--d4066fe5d8834af3a6e32b4cefa7e263.nii.gz

SWU_4/sub-0025690/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025690/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/vf/MD5E-s202976--2c72d505ea154a1677810a48f58acc6f.nii.gz/MD5E-s202976--2c72d505ea154a1677810a48f58acc6f.nii.gz

SWU_4/sub-0025690/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025690/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/0V/MD5E-s273488--8ebed3b06159ba09493f762ef7c11d7e.nii.gz/MD5E-s273488--8ebed3b06159ba09493f762ef7c11d7e.nii.gz

SWU_4/sub-0025690/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025690/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XF/3f/MD5E-s305068--42c038f0363ff3d32226a7e6a2cfca8a.nii.gz/MD5E-s305068--42c038f0363ff3d32226a7e6a2cfca8a.nii.gz

SWU_4/sub-0025690/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025690/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/vp/MD5E-s25915--ccad5438f81178086d150ee8ace11db7.nii.gz/MD5E-s25915--ccad5438f81178086d150ee8ace11db7.nii.gz

SWU_4/sub-0025690/ses-2/mri/aal3_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025690/ses-2/mri/aal3_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/JZ/MD5E-s204316--e7d9dff5f1ad70e4b35541dd82053150.nii.gz/MD5E-s204316--e7d9dff5f1ad70e4b35541dd82053150.nii.gz

SWU_4/sub-0025690/ses-2/mri/anatomy3_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025690/ses-2/mri/anatomy3_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8z/Kk/MD5E-s147739--c610ebbdd4edc95eececbb738511c379.nii.gz/MD5E-s147739--c610ebbdd4edc95eececbb738511c379.nii.gz

SWU_4/sub-0025690/ses-2/mri/anon_misub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/xp/MD5E-s9328494--6073a063ba4c0485a8f6d91022641911.nii.gz/MD5E-s9328494--6073a063ba4c0485a8f6d91022641911.nii.gz

SWU_4/sub-0025690/ses-2/mri/anon_msub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/3P/MD5E-s8754199--0b0c333e4700173a83338dab8af99428.nii.gz/MD5E-s8754199--0b0c333e4700173a83338dab8af99428.nii.gz

SWU_4/sub-0025690/ses-2/mri/cat_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/V2/MD5E-s108400--a650e3bd7489539752d590ebdcc238f2.nii.gz/MD5E-s108400--a650e3bd7489539752d590ebdcc238f2.nii.gz

SWU_4/sub-0025690/ses-2/mri/cobra_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025690/ses-2/mri/cobra_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jz/F9/MD5E-s51849--5173230947c98d8f910a5e4984e5d40a.nii.gz/MD5E-s51849--5173230947c98d8f910a5e4984e5d40a.nii.gz

SWU_4/sub-0025690/ses-2/mri/hammers_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025690/ses-2/mri/hammers_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/kK/MD5E-s161460--a238b2e122bafc99103ce53f0e546f00.nii.gz/MD5E-s161460--a238b2e122bafc99103ce53f0e546f00.nii.gz

SWU_4/sub-0025690/ses-2/mri/ibsr_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025690/ses-2/mri/ibsr_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qj/5W/MD5E-s168917--058a00af1868dfda6747cb85a3491143.nii.gz/MD5E-s168917--058a00af1868dfda6747cb85a3491143.nii.gz

SWU_4/sub-0025690/ses-2/mri/it_sub-0025690_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/wK/MD5E-s283--377ad303cbeac8d602e19717cd9d40b8.mat/MD5E-s283--377ad303cbeac8d602e19717cd9d40b8.mat

SWU_4/sub-0025690/ses-2/mri/it_sub-0025690_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pJ/Mg/MD5E-s283--82e5667ff9ed3d62a547de5cd708de7c.mat/MD5E-s283--82e5667ff9ed3d62a547de5cd708de7c.mat

SWU_4/sub-0025690/ses-2/mri/iy_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QM/Xv/MD5E-s52579968--5c803465e904bab249520225aba4b48d.nii.gz/MD5E-s52579968--5c803465e904bab249520225aba4b48d.nii.gz

SWU_4/sub-0025690/ses-2/mri/julichbrain_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025690/ses-2/mri/julichbrain_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/Gk/MD5E-s218038--8447a6b9278aab86674170d5392cd2d8.nii.gz/MD5E-s218038--8447a6b9278aab86674170d5392cd2d8.nii.gz

SWU_4/sub-0025690/ses-2/mri/lpba40_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025690/ses-2/mri/lpba40_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/Q5/MD5E-s156791--97f1aeea090c5a51627f2acaf76fbac7.nii.gz/MD5E-s156791--97f1aeea090c5a51627f2acaf76fbac7.nii.gz

SWU_4/sub-0025690/ses-2/mri/m0wp1sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/v3/MD5E-s2575350--abdf0036c11cd0f579f44d4d4034bd76.nii.gz/MD5E-s2575350--abdf0036c11cd0f579f44d4d4034bd76.nii.gz

SWU_4/sub-0025690/ses-2/mri/m0wp2sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jj/x0/MD5E-s2324115--96b166dc55926bf672fcf5fa8b03e152.nii.gz/MD5E-s2324115--96b166dc55926bf672fcf5fa8b03e152.nii.gz

SWU_4/sub-0025690/ses-2/mri/m0wp3sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/MK/MD5E-s2541555--b4b6688688d276a8006be799b137e98a.nii.gz/MD5E-s2541555--b4b6688688d276a8006be799b137e98a.nii.gz

SWU_4/sub-0025690/ses-2/mri/mori_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025690/ses-2/mri/mori_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/3z/MD5E-s187951--348f895b7594769abb074fc1f2f9e03e.nii.gz/MD5E-s187951--348f895b7594769abb074fc1f2f9e03e.nii.gz

SWU_4/sub-0025690/ses-2/mri/mwp1sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/P5/MD5E-s2575148--158db38d6d82f97c6488c12d15edb5ab.nii.gz/MD5E-s2575148--158db38d6d82f97c6488c12d15edb5ab.nii.gz

SWU_4/sub-0025690/ses-2/mri/mwp2sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/KP/MD5E-s2320627--af9c8f688d62ba17599094323b3e6792.nii.gz/MD5E-s2320627--af9c8f688d62ba17599094323b3e6792.nii.gz

SWU_4/sub-0025690/ses-2/mri/mwp3sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/20/07/MD5E-s2537784--933bf8f44360ae686d4416cbeb1d0c68.nii.gz/MD5E-s2537784--933bf8f44360ae686d4416cbeb1d0c68.nii.gz

SWU_4/sub-0025690/ses-2/mri/neuromorphometrics_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025690/ses-2/mri/neuromorphometrics_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/6G/MD5E-s219410--19325bb979be517d7abd51c3d2957727.nii.gz/MD5E-s219410--19325bb979be517d7abd51c3d2957727.nii.gz

SWU_4/sub-0025690/ses-2/mri/p0sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mP/gm/MD5E-s727344--c0de5220213c6a15cc98585e5f61b320.nii.gz/MD5E-s727344--c0de5220213c6a15cc98585e5f61b320.nii.gz

SWU_4/sub-0025690/ses-2/mri/p1sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6x/Gv/MD5E-s771695--c8ad57ee8a1ccb3c5d86588ff26ab957.nii.gz/MD5E-s771695--c8ad57ee8a1ccb3c5d86588ff26ab957.nii.gz

SWU_4/sub-0025690/ses-2/mri/p2sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/PJ/MD5E-s505437--741f47b0514069de0c25fcb8382cc70f.nii.gz/MD5E-s505437--741f47b0514069de0c25fcb8382cc70f.nii.gz

SWU_4/sub-0025690/ses-2/mri/p3sub-0025690_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025690/ses-2/mri/rp1sub-0025690_ses-2_run-1_T1w_affine.nii.gz

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+../../../../.git/annex/objects/8X/2m/MD5E-s459416--19ce12b79114972d5b8dec244cde92f9.nii.gz/MD5E-s459416--19ce12b79114972d5b8dec244cde92f9.nii.gz

SWU_4/sub-0025690/ses-2/mri/rp2sub-0025690_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025690/ses-2/mri/rp3sub-0025690_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025690/ses-2/mri/t_sub-0025690_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025690/ses-2/mri/t_sub-0025690_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/5W/MD5E-s283--ce12489a29ef410ca5bc16c2158e2564.mat/MD5E-s283--ce12489a29ef410ca5bc16c2158e2564.mat

SWU_4/sub-0025690/ses-2/mri/thalamus_sub-0025690_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025690/ses-2/mri/thalamus_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/8q/MD5E-s16702--a810a3418afd6b091f791f34d49b9e94.nii.gz/MD5E-s16702--a810a3418afd6b091f791f34d49b9e94.nii.gz

SWU_4/sub-0025690/ses-2/mri/wj_sub-0025690_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025690/ses-2/mri/wmisub-0025690_ses-2_run-1_T1w.nii.gz

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