[DATALAD RUNCMD] Compute IPCAS_8/sub-0025591/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_8/sub-0025591/ses-2/anat/sub-0025591_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_8/sub-0025591/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_8/sub-0025591/ses-2/label/catROI_sub-0025591_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/f6/MD5E-s58053--8477eb10eeb6ce38718499120c9a8793.mat/MD5E-s58053--8477eb10eeb6ce38718499120c9a8793.mat

IPCAS_8/sub-0025591/ses-2/label/catROI_sub-0025591_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pm/w2/MD5E-s189111--17d8deedef85cf004951210e56e21865.xml/MD5E-s189111--17d8deedef85cf004951210e56e21865.xml

IPCAS_8/sub-0025591/ses-2/label/catROIs_sub-0025591_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/83/f1/MD5E-s120100--6e9ab6e70daae636892221f4c3a49d3e.mat/MD5E-s120100--6e9ab6e70daae636892221f4c3a49d3e.mat

IPCAS_8/sub-0025591/ses-2/label/catROIs_sub-0025591_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/9g/MD5E-s332178--7a14569b509a1f584691dfb50b7534dc.xml/MD5E-s332178--7a14569b509a1f584691dfb50b7534dc.xml

IPCAS_8/sub-0025591/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_8/sub-0025591/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/53/2k/MD5E-s153843--a8f892084f26f85e7b47a99d2286554f.nii.gz/MD5E-s153843--a8f892084f26f85e7b47a99d2286554f.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_8/sub-0025591/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/5K/MD5E-s170685--7e47c75ac74bd980ebfd16a7221cfb46.nii.gz/MD5E-s170685--7e47c75ac74bd980ebfd16a7221cfb46.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_8/sub-0025591/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/xw/MD5E-s229488--92e4ccd9255680a9343c9fe6942031a5.nii.gz/MD5E-s229488--92e4ccd9255680a9343c9fe6942031a5.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_8/sub-0025591/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/QJ/MD5E-s254512--16105f961e6d30ecf27c2346b572f559.nii.gz/MD5E-s254512--16105f961e6d30ecf27c2346b572f559.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IPCAS_8/sub-0025591/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f3/g8/MD5E-s20108--b78e2e3694836504b99ea1fca7274286.nii.gz/MD5E-s20108--b78e2e3694836504b99ea1fca7274286.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/aal3_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_8/sub-0025591/ses-2/mri/aal3_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/q6/MD5E-s174434--31184ad13e62f09d651a3ef1ae10b847.nii.gz/MD5E-s174434--31184ad13e62f09d651a3ef1ae10b847.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/anatomy3_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_8/sub-0025591/ses-2/mri/anatomy3_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/13/MD5E-s121827--38f02e52b9d006490c81679905c7f576.nii.gz/MD5E-s121827--38f02e52b9d006490c81679905c7f576.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/anon_misub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/kZ/MD5E-s4370844--f751525bc240923e80eabb07937a7b34.nii.gz/MD5E-s4370844--f751525bc240923e80eabb07937a7b34.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/anon_msub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F9/w7/MD5E-s9296829--0c5ed84947f80639d6d60cf247de6d51.nii.gz/MD5E-s9296829--0c5ed84947f80639d6d60cf247de6d51.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/cat_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5F/gP/MD5E-s95322--9d9a35f5a4dc5df31004a9715d04d832.nii.gz/MD5E-s95322--9d9a35f5a4dc5df31004a9715d04d832.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/cobra_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_8/sub-0025591/ses-2/mri/cobra_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/Wk/MD5E-s41701--e824d2a07be8eb339cfcb5624faf986e.nii.gz/MD5E-s41701--e824d2a07be8eb339cfcb5624faf986e.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/hammers_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_8/sub-0025591/ses-2/mri/hammers_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/F0/MD5E-s135711--12acd6d285912e2cf416345d770e0a2a.nii.gz/MD5E-s135711--12acd6d285912e2cf416345d770e0a2a.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/ibsr_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_8/sub-0025591/ses-2/mri/ibsr_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/51/MD5E-s143554--cd44465c987ec3c391e623d193d7d2d6.nii.gz/MD5E-s143554--cd44465c987ec3c391e623d193d7d2d6.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/it_sub-0025591_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q8/kp/MD5E-s283--646c0124fe911f458e8c83d854539f83.mat/MD5E-s283--646c0124fe911f458e8c83d854539f83.mat

IPCAS_8/sub-0025591/ses-2/mri/it_sub-0025591_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/0X/MD5E-s283--a8e3bd861ac504550c275a0fdf5e40c1.mat/MD5E-s283--a8e3bd861ac504550c275a0fdf5e40c1.mat

IPCAS_8/sub-0025591/ses-2/mri/iy_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/8M/MD5E-s38280155--fe1e180e4a8b1e4d21f08a210261f973.nii.gz/MD5E-s38280155--fe1e180e4a8b1e4d21f08a210261f973.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/julichbrain_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IPCAS_8/sub-0025591/ses-2/mri/julichbrain_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Q/jK/MD5E-s182289--81263e8bb41f75d47c477ce5d2169b91.nii.gz/MD5E-s182289--81263e8bb41f75d47c477ce5d2169b91.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/lpba40_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

IPCAS_8/sub-0025591/ses-2/mri/lpba40_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2q/GP/MD5E-s132026--3b045c224f344f6e0a56bc2c198f62b1.nii.gz/MD5E-s132026--3b045c224f344f6e0a56bc2c198f62b1.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/m0wp1sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_8/sub-0025591/ses-2/mri/m0wp2sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/01/K1/MD5E-s2308060--92dd4b7f5636e7448bf03ecd1cff464e.nii.gz/MD5E-s2308060--92dd4b7f5636e7448bf03ecd1cff464e.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/m0wp3sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/Jj/MD5E-s2605614--2ccfa84e7dc6667e8066e51872aae1fb.nii.gz/MD5E-s2605614--2ccfa84e7dc6667e8066e51872aae1fb.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/mori_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

IPCAS_8/sub-0025591/ses-2/mri/mori_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/1z/MD5E-s161477--a14b95dbaea2a6abfaf727f015debbd5.nii.gz/MD5E-s161477--a14b95dbaea2a6abfaf727f015debbd5.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/mwp1sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g4/8F/MD5E-s2578075--54cea5d4f8cab744de63cfa4e78a1780.nii.gz/MD5E-s2578075--54cea5d4f8cab744de63cfa4e78a1780.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/mwp2sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/19/XJ/MD5E-s2304252--ac92fa611851ef7c87d9f2bd2abe2e0d.nii.gz/MD5E-s2304252--ac92fa611851ef7c87d9f2bd2abe2e0d.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/mwp3sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_8/sub-0025591/ses-2/mri/neuromorphometrics_sub-0025591_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_8/sub-0025591/ses-2/mri/neuromorphometrics_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_8/sub-0025591/ses-2/mri/p0sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/zp/MD5E-s817820--751f281ea55ea6584b05817a5fe0c2d4.nii.gz/MD5E-s817820--751f281ea55ea6584b05817a5fe0c2d4.nii.gz

IPCAS_8/sub-0025591/ses-2/mri/p1sub-0025591_ses-2_run-1_T1w.nii.gz

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IPCAS_8/sub-0025591/ses-2/mri/p2sub-0025591_ses-2_run-1_T1w.nii.gz

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IPCAS_8/sub-0025591/ses-2/mri/p3sub-0025591_ses-2_run-1_T1w.nii.gz

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IPCAS_8/sub-0025591/ses-2/mri/rp1sub-0025591_ses-2_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025591/ses-2/mri/rp2sub-0025591_ses-2_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025591/ses-2/mri/rp3sub-0025591_ses-2_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025591/ses-2/mri/t_sub-0025591_ses-2_run-1_T1w_affine_reorient.mat

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IPCAS_8/sub-0025591/ses-2/mri/t_sub-0025591_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/Gg/MD5E-s282--2c1d3237c5455a330698d0d4c2718280.mat/MD5E-s282--2c1d3237c5455a330698d0d4c2718280.mat

IPCAS_8/sub-0025591/ses-2/mri/thalamus_sub-0025591_ses-2_run-1_T1w.csv

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IPCAS_8/sub-0025591/ses-2/mri/thalamus_sub-0025591_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_8/sub-0025591/ses-2/mri/wj_sub-0025591_ses-2_run-1_T1w.nii.gz

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