[DATALAD RUNCMD] Compute NYU_2/sub-0025169/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025169/ses-1/anat/sub-0025169_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025169/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025169/ses-1/label/catROI_sub-0025169_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/xJ/MD5E-s58019--1cf50962c96e35cbf5ec576b46111cfa.mat/MD5E-s58019--1cf50962c96e35cbf5ec576b46111cfa.mat

NYU_2/sub-0025169/ses-1/label/catROI_sub-0025169_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/MP/MD5E-s188923--30c1678e0c662ba54d017b5c6ab09f10.xml/MD5E-s188923--30c1678e0c662ba54d017b5c6ab09f10.xml

NYU_2/sub-0025169/ses-1/label/catROIs_sub-0025169_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/JV/MD5E-s120102--6bc6edf15dbff66660f996c0493cffee.mat/MD5E-s120102--6bc6edf15dbff66660f996c0493cffee.mat

NYU_2/sub-0025169/ses-1/label/catROIs_sub-0025169_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/gx/MD5E-s332068--fbcc2f351275fb1c776e9001f447e20f.xml/MD5E-s332068--fbcc2f351275fb1c776e9001f447e20f.xml

NYU_2/sub-0025169/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025169/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X1/06/MD5E-s148841--94ac2437fd5ed6699b94764602e62d16.nii.gz/MD5E-s148841--94ac2437fd5ed6699b94764602e62d16.nii.gz

NYU_2/sub-0025169/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025169/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/vf/MD5E-s165285--444d837b6eabe5b1c2e55c531dd73a32.nii.gz/MD5E-s165285--444d837b6eabe5b1c2e55c531dd73a32.nii.gz

NYU_2/sub-0025169/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025169/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fx/GP/MD5E-s223233--634e062e2088f26cba1b6e81b6885f4e.nii.gz/MD5E-s223233--634e062e2088f26cba1b6e81b6885f4e.nii.gz

NYU_2/sub-0025169/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025169/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/p0/MD5E-s247469--6a3c2a0f0811bad91e6708e9a1f220f0.nii.gz/MD5E-s247469--6a3c2a0f0811bad91e6708e9a1f220f0.nii.gz

NYU_2/sub-0025169/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025169/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/8F/MD5E-s19694--e246e952f33034acbf549d8443a9249a.nii.gz/MD5E-s19694--e246e952f33034acbf549d8443a9249a.nii.gz

NYU_2/sub-0025169/ses-1/mri/aal3_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025169/ses-1/mri/aal3_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/X7/MD5E-s169350--521be8ae833f4a03234030bf880f1b3b.nii.gz/MD5E-s169350--521be8ae833f4a03234030bf880f1b3b.nii.gz

NYU_2/sub-0025169/ses-1/mri/anatomy3_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025169/ses-1/mri/anatomy3_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/vm/MD5E-s117334--3d1efc7bc6cea452bfcedfc2f482828f.nii.gz/MD5E-s117334--3d1efc7bc6cea452bfcedfc2f482828f.nii.gz

NYU_2/sub-0025169/ses-1/mri/anon_misub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/qp/MD5E-s4257239--90007d3caf7d816d049185321c4247f5.nii.gz/MD5E-s4257239--90007d3caf7d816d049185321c4247f5.nii.gz

NYU_2/sub-0025169/ses-1/mri/anon_msub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/2G/MD5E-s9293594--b4db23bc779d0fb75e2aaa47c9d1348f.nii.gz/MD5E-s9293594--b4db23bc779d0fb75e2aaa47c9d1348f.nii.gz

NYU_2/sub-0025169/ses-1/mri/cat_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/19/MD5E-s88952--f55462770b50e4d0f50c5aaf6af872ce.nii.gz/MD5E-s88952--f55462770b50e4d0f50c5aaf6af872ce.nii.gz

NYU_2/sub-0025169/ses-1/mri/cobra_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025169/ses-1/mri/cobra_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/83/MD5E-s40534--7c4046384fabcccf7d1ca4db6d072d3e.nii.gz/MD5E-s40534--7c4046384fabcccf7d1ca4db6d072d3e.nii.gz

NYU_2/sub-0025169/ses-1/mri/hammers_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025169/ses-1/mri/hammers_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P0/x8/MD5E-s131184--8fed48c4fa47ee7a592a378b9771f9e4.nii.gz/MD5E-s131184--8fed48c4fa47ee7a592a378b9771f9e4.nii.gz

NYU_2/sub-0025169/ses-1/mri/ibsr_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025169/ses-1/mri/ibsr_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/77/MD5E-s138507--ef9ca5b8faec2f8832dca6f0a7cfdb26.nii.gz/MD5E-s138507--ef9ca5b8faec2f8832dca6f0a7cfdb26.nii.gz

NYU_2/sub-0025169/ses-1/mri/it_sub-0025169_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/Vk/MD5E-s282--01e9bf2e41eefb0727c1a6d424e12ce4.mat/MD5E-s282--01e9bf2e41eefb0727c1a6d424e12ce4.mat

NYU_2/sub-0025169/ses-1/mri/it_sub-0025169_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XX/wQ/MD5E-s281--97628b819c4c7fab3a8995b44372b718.mat/MD5E-s281--97628b819c4c7fab3a8995b44372b718.mat

NYU_2/sub-0025169/ses-1/mri/iy_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/4W/MD5E-s35012531--3344c1ed13eb12082b4406bc54cef987.nii.gz/MD5E-s35012531--3344c1ed13eb12082b4406bc54cef987.nii.gz

NYU_2/sub-0025169/ses-1/mri/julichbrain_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025169/ses-1/mri/julichbrain_sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vv/9v/MD5E-s176011--15a541cae6eb3db18a1ed42c567b9b48.nii.gz/MD5E-s176011--15a541cae6eb3db18a1ed42c567b9b48.nii.gz

NYU_2/sub-0025169/ses-1/mri/lpba40_sub-0025169_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025169/ses-1/mri/lpba40_sub-0025169_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025169/ses-1/mri/m0wp1sub-0025169_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025169/ses-1/mri/m0wp2sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4J/q0/MD5E-s2280307--a871520279971bb35ed61f097673fe7a.nii.gz/MD5E-s2280307--a871520279971bb35ed61f097673fe7a.nii.gz

NYU_2/sub-0025169/ses-1/mri/m0wp3sub-0025169_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/pm/gp/MD5E-s2352565--a4ffb41572541f0e7d788ece209ed129.nii.gz/MD5E-s2352565--a4ffb41572541f0e7d788ece209ed129.nii.gz

NYU_2/sub-0025169/ses-1/mri/mori_sub-0025169_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025169/ses-1/mri/mori_sub-0025169_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025169/ses-1/mri/mwp1sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/zz/MD5E-s2587780--630a557aaae83491236fdeb1605a196d.nii.gz/MD5E-s2587780--630a557aaae83491236fdeb1605a196d.nii.gz

NYU_2/sub-0025169/ses-1/mri/mwp2sub-0025169_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025169/ses-1/mri/mwp3sub-0025169_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025169/ses-1/mri/neuromorphometrics_sub-0025169_ses-1_run-1_T1w.csv

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NYU_2/sub-0025169/ses-1/mri/neuromorphometrics_sub-0025169_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025169/ses-1/mri/p0sub-0025169_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025169/ses-1/mri/p1sub-0025169_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025169/ses-1/mri/p2sub-0025169_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025169/ses-1/mri/p3sub-0025169_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025169/ses-1/mri/rp1sub-0025169_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025169/ses-1/mri/rp2sub-0025169_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025169/ses-1/mri/rp3sub-0025169_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025169/ses-1/mri/t_sub-0025169_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025169/ses-1/mri/t_sub-0025169_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025169/ses-1/mri/thalamus_sub-0025169_ses-1_run-1_T1w.csv

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NYU_2/sub-0025169/ses-1/mri/thalamus_sub-0025169_ses-1_run-1_T1w.nii.gz

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